diff --git a/cara/apps/calculator/model_generator.py b/cara/apps/calculator/model_generator.py index a6a41fab..06c29229 100644 --- a/cara/apps/calculator/model_generator.py +++ b/cara/apps/calculator/model_generator.py @@ -11,7 +11,7 @@ from cara import data import cara.data.weather import cara.monte_carlo as mc from .. import calculator -from cara.monte_carlo.data import activity_distributions, virus_distributions +from cara.monte_carlo.data import activity_distributions, virus_distributions, mask_distributions LOG = logging.getLogger(__name__) @@ -359,7 +359,10 @@ class FormData: def mask(self) -> models.Mask: # Initializes the mask type if mask wearing is "continuous", otherwise instantiates the mask attribute as # the "No mask"-mask - mask = models.Mask.types[self.mask_type if self.mask_wearing_option == "mask_on" else 'No mask'] + if self.mask_wearing_option == 'mask_on': + mask = mask_distributions[self.mask_type] + else: + mask = models.Mask.types['No mask'] return mask def infected_population(self) -> mc.InfectedPopulation: diff --git a/cara/apps/templates/common_text.md.j2 b/cara/apps/templates/common_text.md.j2 index 63512dee..ac8829d7 100644 --- a/cara/apps/templates/common_text.md.j2 +++ b/cara/apps/templates/common_text.md.j2 @@ -71,3 +71,6 @@ We wish to thank CERN’s HSE Unit, Beams Department, Experimental Physics Depar [54] Leung, N.H.L et al. Respiratory virus shedding in exhaled breath and efficacy of face masks. Nat Med (2020). 10.1038/s41591-020-0843-2.
[55] Asadi, S., Cappa, C.D., Barreda, S. et al. Efficacy of masks and face coverings in controlling outward aerosol particle emission from expiratory activities. Sci Rep 10, 15665 (2020). https://doi.org/10.1038/s41598-020-72798-7.
[56] Endo A, Abbott S et al. Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China [version 3; peer review: 2 approved]. Wellcome Open Res 2020, 5:67. doi:10.12688/wellcomeopenres.15842.3.
+[57] Jin Pan, Charbel Harb, Weinan Leng & Linsey C. Marr (2021) Inward and outward effectiveness of cloth masks, a surgical mask, and a face shield, Aerosol Science and Technology, 55:6, 718-733, doi: 10.1080/02786826.2021.1890687.
+[58] C. Makison Booth, M. Clayton, B. Crook, J.M. Gawn, Effectiveness of surgical masks against influenza bioaerosols, Journal of Hospital Infection, Volume 84, Issue 1, 2013, Pages 22-26, https://doi.org/10.1016/j.jhin.2013.02.007.
+[59] Riediker, M., Monn, C. (2021). Simulation of SARS-CoV-2 Aerosol Emissions in the Infected Population and Resulting Airborne Exposures in Different Indoor Scenarios. Aerosol Air Qual. Res. 21, 200531. https://doi.org/10.4209/aaqr.2020.08.0531.
\ No newline at end of file diff --git a/cara/monte_carlo/data.py b/cara/monte_carlo/data.py index 613b830c..4415efbb 100644 --- a/cara/monte_carlo/data.py +++ b/cara/monte_carlo/data.py @@ -1,7 +1,7 @@ import numpy as np import cara.monte_carlo as mc -from cara.monte_carlo.sampleable import Normal,LogNormal,LogCustomKernel +from cara.monte_carlo.sampleable import Normal,LogNormal,LogCustomKernel, Uniform # From CERN-OPEN-2021-04 and refererences therein @@ -58,3 +58,13 @@ virus_distributions = { infectious_dose=60/1.6, ), } + + +# From: +# https://doi.org/10.1080/02786826.2021.1890687 +# https://doi.org/10.1016/j.jhin.2013.02.007 +# https://doi.org/10.4209/aaqr.2020.08.0531 +mask_distributions = { + 'Type I': mc.Mask(Uniform(0.25, 0.80)), + 'FFP2': mc.Mask(Uniform(0.83, 0.91)), +} \ No newline at end of file diff --git a/cara/monte_carlo/sampleable.py b/cara/monte_carlo/sampleable.py index 4333c93f..27907e49 100644 --- a/cara/monte_carlo/sampleable.py +++ b/cara/monte_carlo/sampleable.py @@ -28,6 +28,18 @@ class Normal(SampleableDistribution): return np.random.normal(self.mean, self.standard_deviation, size=size) +class Uniform(SampleableDistribution): + """ + Defines a continuous uniform distribution + """ + def __init__(self, low: float, high: float): + self.low = low + self.high = high + + def generate_samples(self, size: int) -> float_array_size_n: + return np.random.uniform(self.low, self.high, size=size) + + class LogNormal(SampleableDistribution): """ Defines a lognormal distribution (i.e. Gaussian distribution vs. the