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allow for mixed expiratory activity in plotting functions

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markus 2021-02-18 15:47:15 +01:00
parent a833cc6178
commit 17340781f5
1 changed files with 7 additions and 4 deletions
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11
cara/montecarlo.py
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@ -542,7 +542,8 @@ def plot_pi_vs_viral_load(baselines: typing.Union[MCExposureModel, typing.List[M
breathing_category=infected.breathing_category,
virus=infected.virus,
samples=samples_per_vl,
viral_load=viral_load
viral_load=viral_load,
expiratory_activity_weights=infected.expiratory_activity_weights
)
),
exposed=baseline.exposed)
@ -597,7 +598,8 @@ def plot_pi_vs_qid(baselines: typing.Union[MCExposureModel, typing.List[MCExposu
breathing_category=infected.breathing_category,
virus=MCVirus(halflife=infected.virus.halflife, qID=qid),
samples=samples_per_qid,
viral_load=infected.viral_load
viral_load=infected.viral_load,
expiratory_activity_weights=infected.expiratory_activity_weights
)
),
exposed=baseline.exposed)
@ -779,7 +781,8 @@ def compare_infection_probabilities_vs_viral_loads(baseline1: MCExposureModel, b
breathing_category=infected.breathing_category,
virus=infected.virus,
samples=samples_per_vl,
viral_load=vl
viral_load=vl,
expiratory_activity_weights=infected.expiratory_activity_weights
)
),
exposed=baseline.exposed) for baseline, infected in ((baseline1, infected1), (baseline2, infected2))]
@ -848,7 +851,7 @@ large_population_baselines = [MCExposureModel(
presence=models.SpecificInterval(((0, 4), (5, 9))),
masked=False,
virus=MCVirus(halflife=1.1, qID=qid),
expiratory_activity=4,
expiratory_activity=1,
samples=200000,
breathing_category=2,
expiratory_activity_weights=(0.7, 0.3, 0)