updated userguide for VE data and moved vaccination block under virus type
This commit is contained in:
Luis Aleixo
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4 changed files with 53 additions and 45 deletions
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@ -1309,7 +1309,7 @@ vaccine_primary_host_immunity = [
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]
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vaccine_booster_host_immunity = [
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{'primary series vaccine': 'AZD1222_(AstraZeneca)', 'booster vaccine': 'AZD1222_(AstraZeneca),'},
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{'primary series vaccine': 'AZD1222_(AstraZeneca)', 'booster vaccine': 'AZD1222_(AstraZeneca)',},
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{'primary series vaccine': 'AZD1222_(AstraZeneca)', 'booster vaccine': 'BNT162b2_(Pfizer)',},
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{'primary series vaccine': 'AZD1222_(AstraZeneca)', 'booster vaccine': 'BNT162b2_(Pfizer)_or_mRNA-1273_(Moderna)',},
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{'primary series vaccine': 'AZD1222_(AstraZeneca)', 'booster vaccine': 'mRNA-1273_(Moderna)',},
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@ -58,7 +58,7 @@
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<b>Virus data:</b>
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<div data-tooltip="Choose the SARS-CoV-2 Variant of Concern (VOC).">
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<div data-tooltip="Choose the SARS-CoV-2 Variant of Concern (VOC) and select the vaccine type taken by the majority of the exposed population.">
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<span class="tooltip_text">?</span>
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</div><br>
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@ -76,6 +76,49 @@
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</div>
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</div>
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<div class="form-group row">
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<div class="col-sm-4">Vaccinated? 💉</div>
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<div class="col-sm-6 ml-0">
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<input type="radio" id="vaccinated_no" name="vaccine_option" value="0" checked="checked">
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<label class="mb-0" for="vaccinated_no">No</label>
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<input class="ml-2" type="radio" id="vaccinated_yes" name="vaccine_option" value="1" data-enables="#DIVvaccine_booster">
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<label class="mb-0" for="vaccinated_yes">Yes</label>
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</div>
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</div>
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<div id="DIVvaccine_booster" class="mt-3">
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<div class="form-group row">
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<div class="col-sm-4"><label class="col-form-label">Primary vaccine:</label></div>
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<div class="col-sm-6 align-self-center">
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<select id="vaccine_type" name="vaccine_type" class="form-control form-control-sm">
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{# Updated with JS #}
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</select>
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</div>
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</div>
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<div class="form-group row">
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<div class="d-flex flex-row col-sm-4"><div class="ml-4" style="border: 1px solid #2f4858"></div><p class="ml-2">With booster?</p></div>
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<div class="col-sm-6 ml-0">
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<input type="radio" id="vaccinated_booster_no" name="vaccine_booster_option" value="0" checked="checked">
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<label class="mb-0" for="vaccinated_booster_no">No</label>
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<input class="ml-2" type="radio" id="vaccinated_booster_yes" name="vaccine_booster_option" value="1" data-enables="#DIVvaccine_booster_yes">
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<label class="mb-0" for="vaccinated_booster_yes">Yes</label>
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</div>
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</div>
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<div id="DIVvaccine_booster_yes" class="mt-3">
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<div class="form-group row">
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<div class="col-sm-4"><label class="col-form-label">Booster:</label></div>
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<div class="col-sm-6 align-self-center">
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<select id="vaccine_booster_type" name="vaccine_booster_type" class="form-control form-control-sm">
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{# Updated with JS #}
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</select>
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</div>
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</div>
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<p id="booster_warning" class="red_text" style="display: none; max-width: 85%">Due to the lack of data, only the efficiency of the primary dose(s) is considered</p>
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</div>
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</div>
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<hr width="80%">
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<b>Room data:</b>
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@ -325,7 +368,7 @@
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<input type="radio" id="p_deterministic_exposure" name="exposure_option" value="p_deterministic_exposure" checked="checked" data-enables="#DIVp_deterministic_exposure">
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<label for="p_deterministic_exposure">Deterministic exposure</label>
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</div>
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<div class="form-group">
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<div class="form-group mb-1">
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<input type="radio" id="p_probabilistic_exposure" name="exposure_option" value="p_probabilistic_exposure" data-enables="#DIVp_probabilistic_exposure">
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<label for="p_probabilistic_exposure">Probabilistic exposure (incidence rate)</label>
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</div>
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@ -359,48 +402,6 @@
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</div>
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<span id="training_limit_error" class="red_text" hidden>Conference/Training activities limited to 1 infected<br></span>
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<div class="form-group row">
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<div class="col-sm-4">Vaccinated? 💉</div>
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<div class="col-sm-6 ml-0">
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<input type="radio" id="vaccinated_no" name="vaccine_option" value="0" checked="checked">
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<label class="mb-0" for="vaccinated_no">No</label>
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<input class="ml-2" type="radio" id="vaccinated_yes" name="vaccine_option" value="1" data-enables="#DIVvaccine_booster">
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<label class="mb-0" for="vaccinated_yes">Yes</label>
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</div>
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</div>
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<div id="DIVvaccine_booster" class="mt-3">
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<div class="form-group row">
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<div class="col-sm-4"><label class="col-form-label">Primary vaccine:</label></div>
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<div class="col-sm-6 align-self-center">
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<select id="vaccine_type" name="vaccine_type" class="form-control form-control-sm">
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{# Updated with JS #}
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</select>
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</div>
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</div>
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<div class="form-group row">
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<div class="d-flex flex-row col-sm-4"><div class="ml-4" style="border: 1px solid #2f4858"></div><p class="ml-2">With booster?</p></div>
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<div class="col-sm-6 ml-0">
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<input type="radio" id="vaccinated_booster_no" name="vaccine_booster_option" value="0" checked="checked">
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<label class="mb-0" for="vaccinated_booster_no">No</label>
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<input class="ml-2" type="radio" id="vaccinated_booster_yes" name="vaccine_booster_option" value="1" data-enables="#DIVvaccine_booster_yes">
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<label class="mb-0" for="vaccinated_booster_yes">Yes</label>
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</div>
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</div>
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<div id="DIVvaccine_booster_yes" class="mt-3">
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<div class="form-group row">
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<div class="col-sm-4"><label class="col-form-label">Booster:</label></div>
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<div class="col-sm-6 align-self-center">
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<select id="vaccine_booster_type" name="vaccine_booster_type" class="form-control form-control-sm">
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{# Updated with JS #}
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</select>
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</div>
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</div>
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<p id="booster_warning" class="red_text" style="display: none; max-width: 85%">Due to the lack of data, only the efficiency of the primary dose(s) is considered</p>
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</div>
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</div>
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<hr width="80%">
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@ -51,6 +51,11 @@ The local population in Manaus had very high levels of Covid-19 antibodies (>
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This factor has been taken into account by the authors of the study, via statistical adjustments to the transmission value (i.e. it has been increased, to account for spread in a population with significant acquired Covid-19 immunity).
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However, this value may be revised in the future as more studies of the Gamma VOC transmission in different geographical locations become available.</p>
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<br>
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<h4>Vaccine effectiveness</h4>
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<br>
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<p>The vaccination input corresponds to the vaccine type(s) administrated to the exposed population, assuming every exposed (or the occupant in question) has received the vaccine cocktail selected by the user.
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The respective vaccine effectiveness values were extracted from data available in <a href="https://view-hub.org/resources">Results of COVID-19 Vaccine Effectiveness Studies: An Ongoing Systematic Review - Updated September 8, 2022</a>, using <a href="https://gitlab.cern.ch/cara/caimira/-/tree/master/caimira/scripts/data/vaccine_effectiveness.py">this script</a>.</p>
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<br>
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<h3>Room Data</h3>
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<br>
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<p>Please enter either the room volume (in m³) or both the floor area (m²) and the room height (m).
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@ -29,3 +29,5 @@ ignore_missing_imports = True
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[mypy-timezonefinder.*]
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ignore_missing_imports = True
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[mypy-pandas.*]
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ignore_missing_imports = True
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