diff --git a/cara/monte_carlo/data.py b/cara/monte_carlo/data.py index b3724524..759e8c06 100644 --- a/cara/monte_carlo/data.py +++ b/cara/monte_carlo/data.py @@ -38,28 +38,30 @@ symptomatic_vl_frequencies = LogCustomKernel( kernel_bandwidth=0.1 ) +# From https://doi.org/10.1093/cid/ciaa1579 +infectious_virus_distribution = Uniform(0.15, 0.45) # From CERN-OPEN-2021-04 and refererences therein virus_distributions = { 'SARS_CoV_2': mc.SARSCoV2( viral_load_in_sputum=symptomatic_vl_frequencies, infectious_dose=100, - viable_to_RNA=Uniform(0.15, 0.45), + viable_to_RNA=infectious_virus_distribution, ), 'SARS_CoV_2_B117': mc.SARSCoV2( viral_load_in_sputum=symptomatic_vl_frequencies, infectious_dose=60, - viable_to_RNA=Uniform(0.15, 0.45), + viable_to_RNA=infectious_virus_distribution, ), 'SARS_CoV_2_P1': mc.SARSCoV2( viral_load_in_sputum=symptomatic_vl_frequencies, infectious_dose=100/2.25, - viable_to_RNA=Uniform(0.15, 0.45), + viable_to_RNA=infectious_virus_distribution, ), 'SARS_CoV_2_B16172': mc.SARSCoV2( viral_load_in_sputum=symptomatic_vl_frequencies, infectious_dose=60/1.6, - viable_to_RNA=Uniform(0.15, 0.45), + viable_to_RNA=infectious_virus_distribution, ), } @@ -73,4 +75,4 @@ mask_distributions = { 'FFP2': mc.Mask(Uniform(0.83, 0.91)), } -infectious_virus_distribution = Uniform(0.15, 0.45) +