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Added a uniform distribution for the infectious dose

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Luis Aleixo 2021-09-17 16:36:07 +02:00
parent 38a8870535
commit 35ea838933
1 changed files with 7 additions and 4 deletions
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11
cara/monte_carlo/data.py
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@ -102,26 +102,29 @@ symptomatic_vl_frequencies = LogCustomKernel(
# From https://doi.org/10.1093/cid/ciaa1579
viable_to_RNA_ratio_distribution = Uniform(0.15, 0.45)
# From discussion with virologists
infectious_dose_distribution = Uniform(10., 100.)
# From CERN-OPEN-2021-04 and refererences therein
virus_distributions = {
'SARS_CoV_2': mc.SARSCoV2(
viral_load_in_sputum=symptomatic_vl_frequencies,
infectious_dose=100,
infectious_dose=infectious_dose_distribution,
viable_to_RNA_ratio=viable_to_RNA_ratio_distribution,
),
'SARS_CoV_2_B117': mc.SARSCoV2(
viral_load_in_sputum=symptomatic_vl_frequencies,
infectious_dose=60,
infectious_dose=infectious_dose_distribution,
viable_to_RNA_ratio=viable_to_RNA_ratio_distribution,
),
'SARS_CoV_2_P1': mc.SARSCoV2(
viral_load_in_sputum=symptomatic_vl_frequencies,
infectious_dose=100/2.25,
infectious_dose=infectious_dose_distribution,
viable_to_RNA_ratio=viable_to_RNA_ratio_distribution,
),
'SARS_CoV_2_B16172': mc.SARSCoV2(
viral_load_in_sputum=symptomatic_vl_frequencies,
infectious_dose=60/1.6,
infectious_dose=infectious_dose_distribution,
viable_to_RNA_ratio=viable_to_RNA_ratio_distribution,
),
}