updated GitLab repository URL
This commit is contained in:
Luis Aleixo
parent
d3a7fa5f2f
commit
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16 changed files with 20 additions and 20 deletions
2
.github/workflows/tests.yml
vendored
2
.github/workflows/tests.yml
vendored
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# This module is part of CAiMIRA. Please see the repository at
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# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
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# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
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name: CI
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on:
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@ -76,10 +76,10 @@ In no event shall the authors or copyright holders be liable for any claim, dama
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## Running CAiMIRA locally
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The easiest way to run a version of CAiMIRA Calculator is to use docker. A pre-built
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image of CAiMIRA is made available at https://gitlab.cern.ch/cara/caimira/container_registry.
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image of CAiMIRA is made available at https://gitlab.cern.ch/caimira/caimira/container_registry.
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In order to run CAiMIRA locally with docker, run the following:
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$ docker run -it -p 8080:8080 gitlab-registry.cern.ch/cara/caimira/calculator
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$ docker run -it -p 8080:8080 gitlab-registry.cern.ch/caimira/caimira/calculator
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This will start a local version of CAiMIRA, which can be visited at http://localhost:8080/.
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@ -1,6 +1,6 @@
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echo 'CAiMIRA is running on http://localhost:8080'
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echo 'Please see https://gitlab.cern.ch/cara/caimira for terms of use.'
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echo 'Please see https://gitlab.cern.ch/caimira/caimira for terms of use.'
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# Run a proxy for the apps (listening on 8080).
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nginx -c /opt/caimira/nginx.conf
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@ -50,7 +50,7 @@
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parameters:
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- name: GIT_REPO
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description: The GIT repo URL
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value: 'https://gitlab.cern.ch/cara/caimira.git'
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value: 'https://gitlab.cern.ch/caimira/caimira.git'
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- name: GIT_BRANCH
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description: The name of the GIT branch to use when building the app, e.g. `live/caimira-test` in TEST, `master` in prod
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required: true
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# This module is part of CAiMIRA. Please see the repository at
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# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
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# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
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"""
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Documentation for the CAiMIRA package
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# This module is part of CAiMIRA. Please see the repository at
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# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
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# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
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import asyncio
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import concurrent.futures
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@ -363,7 +363,7 @@
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{% elif form.virus_type == "SARS_CoV_2_DELTA" %}
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<a href="https://www.bmj.com/content/373/bmj.n1513">SARS-CoV-2 (Delta VOC)</a>
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{% elif form.virus_type == "SARS_CoV_2_OMICRON" %}
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<a href="https://gitlab.cern.ch/cara/caimira/-/issues/226">SARS-CoV-2 (Omicron VOC)</a>
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<a href="https://gitlab.cern.ch/caimira/caimira/-/issues/226">SARS-CoV-2 (Omicron VOC)</a>
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{% endif %}
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</p></li>
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<li><p class="data_text">Room Volume: {{ model.concentration_model.room.volume }} m³</p></li>
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@ -23,7 +23,7 @@
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Please see the <a href="/about">About</a> page for more details on the methodology, assumptions and limitations of CAiMIRA.
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</p>
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<p>
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The full CAiMIRA source code can be accessed freely under an Apache 2.0 open source license from our <a href="https://gitlab.cern.ch/cara/caimira">code repository</a>.
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The full CAiMIRA source code can be accessed freely under an Apache 2.0 open source license from our <a href="https://gitlab.cern.ch/caimira/caimira">code repository</a>.
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It includes detailed instructions on how to run your own version of this tool.
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</p>
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<br>
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@ -58,7 +58,7 @@
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</div>
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<div class="w-25 mobile-sub-section"><hr width="95%">
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<div class="d-flex m-2 align-items-center"><i class="bi bi-git" style="font-size: 25px"></i><div><p class="paragraph-title ml-2">Git</p></div></div>
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<div class="m-2">Official CAiMIRA GitLab <a href="https://gitlab.cern.ch/cara/caimira">repository</a>.<br></div>
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<div class="m-2">Official CAiMIRA GitLab <a href="https://gitlab.cern.ch/caimira/caimira">repository</a>.<br></div>
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</div>
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</div>
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</div>
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@ -91,7 +91,7 @@
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<a href="https://doi.org/10.5281/zenodo.6520431"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.6520431.svg" alt="DOI"></a><br>
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© Copyright 2020-2021 CERN. All rights not expressly granted are reserved.<br>
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Licensed under the Apache License, Version 2.0<br>
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<a href=https://gitlab.cern.ch/cara/caimira/-/blob/master/LICENSE><i>LICENSE</i></a>
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<a href=https://gitlab.cern.ch/caimira/caimira/-/blob/master/LICENSE><i>LICENSE</i></a>
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</ul>
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</p>
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</div>
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@ -92,9 +92,9 @@
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policy issues. Any initiative is conducted on a best effort and as-is basis, without liability or
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warranty.</em></span></p>
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<p style="font-size:10px;">
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CAiMIRA is <a href="https://gitlab.cern.ch/cara/caimira/-/blob/master/LICENSE" class="ext">Apache 2.0 licensed</a> open-source
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CAiMIRA is <a href="https://gitlab.cern.ch/caimira/caimira/-/blob/master/LICENSE" class="ext">Apache 2.0 licensed</a> open-source
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software developed at CERN.
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You can find the source code at <a href="https://gitlab.cern.ch/cara/caimira">https://gitlab.cern.ch/cara/caimira</a>,
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You can find the source code at <a href="https://gitlab.cern.ch/caimira/caimira">https://gitlab.cern.ch/caimira/caimira</a>,
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where we welcome contributions, feature requests and issue reports.
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</p>
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</div>
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@ -54,7 +54,7 @@ However, this value may be revised in the future as more studies of the Gamma VO
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<h4>Vaccine effectiveness</h4>
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<br>
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<p>The vaccination input corresponds to the vaccine type(s) administrated to the exposed population, assuming every exposed (or the occupant in question) has received the vaccine cocktail selected by the user.
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The respective vaccine effectiveness values were extracted from data available in <a href="https://view-hub.org/resources">Results of COVID-19 Vaccine Effectiveness Studies: An Ongoing Systematic Review - Updated September 8, 2022</a>, using <a href="https://gitlab.cern.ch/cara/caimira/-/tree/master/caimira/scripts/data/vaccine_effectiveness.py">this script</a>.</p>
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The respective vaccine effectiveness values were extracted from data available in <a href="https://view-hub.org/resources">Results of COVID-19 Vaccine Effectiveness Studies: An Ongoing Systematic Review - Updated September 8, 2022</a>, using <a href="https://gitlab.cern.ch/caimira/caimira/-/tree/master/caimira/scripts/data/vaccine_effectiveness.py">this script</a>.</p>
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<br>
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<h3>Room Data</h3>
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<br>
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# This module is part of CAiMIRA. Please see the repository at
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# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
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# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
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"""
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This module implements the core CAiMIRA models.
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cd Downloads
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git clone https://gitlab.cern.ch/cara/caimira.git
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git clone https://gitlab.cern.ch/caimira/caimira.git
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cd caimira
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if [[ `uname -m` == 'arm64' ]]; then
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pip3 install scipy --index-url=https://pypi.anaconda.org/scipy-wheels-nightly/simple
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git clone https://gitlab.cern.ch/cara/caimira.git
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git clone https://gitlab.cern.ch/caimira/caimira.git
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cd caimira
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pip install -e .
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echo "############################################"
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cd Downloads
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git clone https://gitlab.cern.ch/cara/caimira.git
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git clone https://gitlab.cern.ch/caimira/caimira.git
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cd caimira
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if [[ `uname -m` == 'arm64' ]]; then
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pip3 install scipy --index-url=https://pypi.anaconda.org/scipy-wheels-nightly/simple
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git clone https://gitlab.cern.ch/cara/caimira.git
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git clone https://gitlab.cern.ch/caimira/caimira.git
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cd caimira
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pip install -e .
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echo "############################################"
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2
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# This module is part of CAiMIRA. Please see the repository at
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# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
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# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
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"""
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setup.py for CAiMIRA.
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