diff --git a/cara/monte_carlo/data.py b/cara/monte_carlo/data.py index 886037cf..63c83084 100644 --- a/cara/monte_carlo/data.py +++ b/cara/monte_carlo/data.py @@ -126,31 +126,31 @@ infectious_dose_distribution = Uniform(10., 100.) # From https://doi.org/10.1101/2021.10.14.21264988 and refererences therein virus_distributions = { 'SARS_CoV_2': mc.SARSCoV2( - viral_load_in_sputum=symptomatic_vl_frequencies, + viral_load_in_sputum=covid_overal_vl_data, infectious_dose=infectious_dose_distribution, viable_to_RNA_ratio=viable_to_RNA_ratio_distribution, transmissibility_factor=1., ), 'SARS_CoV_2_ALPHA': mc.SARSCoV2( - viral_load_in_sputum=symptomatic_vl_frequencies, + viral_load_in_sputum=covid_overal_vl_data, infectious_dose=infectious_dose_distribution, viable_to_RNA_ratio=viable_to_RNA_ratio_distribution, transmissibility_factor=0.78, ), 'SARS_CoV_2_BETA': mc.SARSCoV2( - viral_load_in_sputum=symptomatic_vl_frequencies, + viral_load_in_sputum=covid_overal_vl_data, infectious_dose=infectious_dose_distribution, viable_to_RNA_ratio=viable_to_RNA_ratio_distribution, transmissibility_factor=0.8, ), 'SARS_CoV_2_GAMMA': mc.SARSCoV2( - viral_load_in_sputum=symptomatic_vl_frequencies, + viral_load_in_sputum=covid_overal_vl_data, infectious_dose=infectious_dose_distribution, viable_to_RNA_ratio=viable_to_RNA_ratio_distribution, transmissibility_factor=0.72, ), 'SARS_CoV_2_DELTA': mc.SARSCoV2( - viral_load_in_sputum=symptomatic_vl_frequencies, + viral_load_in_sputum=covid_overal_vl_data, infectious_dose=infectious_dose_distribution, viable_to_RNA_ratio=viable_to_RNA_ratio_distribution, transmissibility_factor=0.51,