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add example with 1 SR interaction

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This commit is contained in:
Andrejh 2022-02-21 14:43:06 +01:00
parent d76c7172cd
commit 4fa3d3b959
1 changed files with 46 additions and 25 deletions
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71
cara/short_range_plots/results.py
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@ -13,10 +13,30 @@ from dataclasses import dataclass
from cara.monte_carlo.data import symptomatic_vl_frequencies
# print('\n<<<<<<<<<<< Peak viral concentration without short range for baseline scenarios >>>>>>>>>>>')
# concentration_curve(models = [exposure_module_without_short_range(activity='Seated', expiration='Breathing', mask='No mask')],
# labels = ['Baseline'],
# concentration_curve(models = [exposure_module_without_short_range(activity='Light activity', expiration={"Speaking": 1, "Breathing": 2}, mask='No mask')],
# labels = ['Background (long-range) concentration'],
# labelsDose = ['Dose (long-range)'],
# colors = ['royalblue'],
# )
# linestyles = ['--'],
# thickness = [2])
# print('\n<<<<<<<<<<< Peak viral concentration with short range interactions for baseline scenarios >>>>>>>>>>>')
# concentration_curve(models=[exposure_module_with_short_range(
# activity='Light activity',
# expiration={"Speaking": 1, "Breathing": 2},
# mask='No mask',
# sr_presence=[(10.5, 11.0)],
# sr_activities=['Breathing']),
# exposure_module_without_short_range(
# activity='Light activity',
# expiration={"Speaking": 1, "Breathing": 2},
# mask='No mask',)
# ],
# labels = ['Concentration with short range interactions', 'Background (long-range) concentration'],
# labelsDose = ['Dose (full)', 'Dose (long-range)'],
# colors = ['salmon', 'royalblue'],
# linestyles = ['-', '--'],
# thickness = [2, 2])
# print('\n<<<<<<<<<<< Peak viral concentration with short range interactions for baseline scenarios >>>>>>>>>>>')
# concentration_curve(models=[exposure_module_with_short_range(
@ -36,26 +56,27 @@ from cara.monte_carlo.data import symptomatic_vl_frequencies
# linestyles = ['-', '--'],
# thickness = [2, 2])
print('\n<<<<<<<<<<< Dose vs SR exposure time >>>>>>>>>>>')
#Always assume 1h for the short range interactions.
#Always assume that in each model there is only ONE short range interaction.
plot_vD_vs_exposure_time(exp_models = [
baseline_model(
activity='Light activity',
expiration={"Speaking": 2, "Breathing": 1},
mask='No mask',
sr_presence=[(8.5, 9.5)],
sr_activities=['Breathing']),
baseline_model(
activity='Light activity',
expiration={"Speaking": 2, "Breathing": 1},
mask='No mask',
sr_presence=[(8.5, 9.5)],
sr_activities=['Speaking'])],
labels = ['Baseline model breathing', 'Baseline model speaking'],
colors=['royalblue', 'darkviolet'],
linestyles=['solid', 'solid'],
points=20,
time_in_minutes=True,
normalize_y_axis=True)
# print('\n<<<<<<<<<<< Dose vs SR exposure time >>>>>>>>>>>')
# #Always assume 1h for the short range interactions.
# #Always assume that in each model there is only ONE short range interaction.
# plot_vD_vs_exposure_time(exp_models = [
# baseline_model(
# activity='Light activity',
# expiration={"Speaking": 2, "Breathing": 1},
# mask='No mask',
# sr_presence=[(8.5, 9.5)],
# sr_activities=['Breathing']),
# baseline_model(
# activity='Light activity',
# expiration={"Speaking": 2, "Breathing": 1},
# mask='No mask',
# sr_presence=[(8.5, 9.5)],
# sr_activities=['Speaking'])],
# labels = ['Baseline model breathing', 'Baseline model speaking'],
# colors=['royalblue', 'darkviolet'],
# linestyles=['solid', 'solid'],
# points=20,
# time_in_minutes=True,
# normalize_y_axis=True)