Adding exposure model vectorisation test
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import numpy as np
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import pytest
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import cara.models
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@pytest.mark.parametrize(
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"override_params", [
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{'volume': np.array([100, 120])},
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{'air_change': np.array([100, 120])},
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{'virus_halflife': np.array([1.1, 1.5])},
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{'viral_load_in_sputum': np.array([5e8, 1e9])},
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{'coefficient_of_infectivity': np.array([0.02, 0.05])},
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{'η_exhale': np.array([0.92, 0.95])},
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{'η_leaks': np.array([0.15, 0.20])},
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{'η_inhale': np.array([0.3, 0.35])},
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]
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)
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def test_exposure_model_vectorisation(override_params):
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defaults = {
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'volume': 75,
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'air_change': 100,
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'virus_halflife': 1.1,
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'viral_load_in_sputum': 1e9,
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'coefficient_of_infectivity': 0.02,
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'η_exhale': 0.95,
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'η_leaks': 0.15,
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'η_inhale': 0.3,
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}
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defaults.update(override_params)
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always = cara.models.PeriodicInterval(240, 240) # TODO: This should be a thing on an interval.
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office_hours = cara.models.SpecificInterval(present_times=[(8,17)])
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c_model = cara.models.ConcentrationModel(
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cara.models.Room(defaults['volume']),
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cara.models.AirChange(always, defaults['air_change']),
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cara.models.InfectedPopulation(
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number=1,
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presence=office_hours,
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mask=cara.models.Mask(
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η_exhale=defaults['η_exhale'],
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η_leaks=defaults['η_leaks'],
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η_inhale=defaults['η_inhale'],
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),
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activity=cara.models.Activity(
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0.51,
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0.75,
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),
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virus=cara.models.Virus(
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halflife=defaults['virus_halflife'],
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viral_load_in_sputum=defaults['viral_load_in_sputum'],
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coefficient_of_infectivity=defaults['coefficient_of_infectivity'],
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),
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expiration=cara.models.Expiration(
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ejection_factor=(0.084, 0.009, 0.003, 0.002),
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),
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)
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)
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e_model = cara.models.ExposureModel(
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concentration_model=c_model,
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exposed=cara.models.Population(
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number=10,
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presence=office_hours,
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activity=c_model.infected.activity,
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mask=c_model.infected.mask,
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)
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)
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expected_new_cases = e_model.expected_new_cases()
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assert isinstance(expected_new_cases, np.ndarray)
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assert expected_new_cases.shape == (2, )
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