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Maintained group name (cara)

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Luis Aleixo 2022-09-15 16:41:10 +02:00
parent 6c541952ee
commit 84b7377dff
15 changed files with 18 additions and 18 deletions
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2
.github/workflows/tests.yml vendored
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# This module is part of CAiMIRA. Please see the repository at # This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use. # https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
name: CI name: CI
on: on:

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README.md
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@ -76,10 +76,10 @@ In no event shall the authors or copyright holders be liable for any claim, dama
## Running CAiMIRA locally ## Running CAiMIRA locally
The easiest way to run a version of CAiMIRA Calculator is to use docker. A pre-built The easiest way to run a version of CAiMIRA Calculator is to use docker. A pre-built
image of CAiMIRA is made available at https://gitlab.cern.ch/caimira/caimira/container_registry. image of CAiMIRA is made available at https://gitlab.cern.ch/cara/caimira/container_registry.
In order to run CAiMIRA locally with docker, run the following: In order to run CAiMIRA locally with docker, run the following:
$ docker run -it -p 8080:8080 gitlab-registry.cern.ch/caimira/caimira/calculator $ docker run -it -p 8080:8080 gitlab-registry.cern.ch/cara/caimira/calculator
This will start a local version of CAiMIRA, which can be visited at http://localhost:8080/. This will start a local version of CAiMIRA, which can be visited at http://localhost:8080/.

2
app-config/caimira-public-docker-image/run_caimira.sh
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echo 'CAiMIRA is running on http://localhost:8080' echo 'CAiMIRA is running on http://localhost:8080'
echo 'Please see https://gitlab.cern.ch/caimira/caimira for terms of use.' echo 'Please see https://gitlab.cern.ch/cara/caimira for terms of use.'
# Run a proxy for the apps (listening on 8080). # Run a proxy for the apps (listening on 8080).
nginx -c /opt/caimira/nginx.conf nginx -c /opt/caimira/nginx.conf

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app-config/openshift/buildconfig.yaml
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parameters: parameters:
- name: GIT_REPO - name: GIT_REPO
description: The GIT repo URL description: The GIT repo URL
value: 'https://gitlab.cern.ch/caimira/caimira.git' value: 'https://gitlab.cern.ch/cara/caimira.git'
- name: GIT_BRANCH - name: GIT_BRANCH
description: The name of the GIT branch to use when building the app, e.g. `live/caimira-test` in TEST, `master` in prod description: The name of the GIT branch to use when building the app, e.g. `live/caimira-test` in TEST, `master` in prod
required: true required: true

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caimira/__init__.py
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# This module is part of CAiMIRA. Please see the repository at # This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use. # https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
""" """
Documentation for the CAiMIRA package Documentation for the CAiMIRA package

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caimira/apps/calculator/__init__.py
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# This module is part of CAiMIRA. Please see the repository at # This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use. # https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
import asyncio import asyncio
import concurrent.futures import concurrent.futures

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caimira/apps/templates/base/calculator.report.html.j2
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{% elif form.virus_type == "SARS_CoV_2_DELTA" %} {% elif form.virus_type == "SARS_CoV_2_DELTA" %}
<a href="https://www.bmj.com/content/373/bmj.n1513">SARS-CoV-2 (Delta VOC)</a> <a href="https://www.bmj.com/content/373/bmj.n1513">SARS-CoV-2 (Delta VOC)</a>
{% elif form.virus_type == "SARS_CoV_2_OMICRON" %} {% elif form.virus_type == "SARS_CoV_2_OMICRON" %}
<a href="https://gitlab.cern.ch/caimira/caimira/-/issues/226">SARS-CoV-2 (Omicron VOC)</a> <a href="https://gitlab.cern.ch/cara/caimira/-/issues/226">SARS-CoV-2 (Omicron VOC)</a>
{% endif %} {% endif %}
</p></li> </p></li>
<li><p class="data_text">Room Volume: {{ model.concentration_model.room.volume }} m³</p></li> <li><p class="data_text">Room Volume: {{ model.concentration_model.room.volume }} m³</p></li>

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caimira/apps/templates/base/index.html.j2
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@ -23,7 +23,7 @@
Please see the <a href="/about">About</a> page for more details on the methodology, assumptions and limitations of CAiMIRA. Please see the <a href="/about">About</a> page for more details on the methodology, assumptions and limitations of CAiMIRA.
</p> </p>
<p> <p>
The full CAiMIRA source code can be accessed freely under an Apache 2.0 open source license from our <a href="https://gitlab.cern.ch/caimira/caimira">code repository</a>. The full CAiMIRA source code can be accessed freely under an Apache 2.0 open source license from our <a href="https://gitlab.cern.ch/cara/caimira">code repository</a>.
It includes detailed instructions on how to run your own version of this tool. It includes detailed instructions on how to run your own version of this tool.
</p> </p>
<br> <br>
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<a href="https://doi.org/10.5281/zenodo.6520432"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.6520432.svg" alt="DOI"></a><br> <a href="https://doi.org/10.5281/zenodo.6520432"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.6520432.svg" alt="DOI"></a><br>
© Copyright 2020-2021 CERN. All rights not expressly granted are reserved.<br> © Copyright 2020-2021 CERN. All rights not expressly granted are reserved.<br>
Licensed under the Apache License, Version 2.0<br> Licensed under the Apache License, Version 2.0<br>
<a href=https://gitlab.cern.ch/caimira/caimira/-/blob/master/LICENSE><i>LICENSE</i></a> <a href=https://gitlab.cern.ch/cara/caimira/-/blob/master/LICENSE><i>LICENSE</i></a>
</ul> </ul>
</p> </p>
</div> </div>

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caimira/apps/templates/base/layout.html.j2
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@ -90,9 +90,9 @@
policy issues. Any initiative is conducted on a best effort and as-is basis, without liability or policy issues. Any initiative is conducted on a best effort and as-is basis, without liability or
warranty.</em></span></p> warranty.</em></span></p>
<p style="font-size:10px;"> <p style="font-size:10px;">
CAiMIRA is <a href="https://gitlab.cern.ch/caimira/caimira/-/blob/master/LICENSE" class="ext">Apache 2.0 licensed</a> open-source CAiMIRA is <a href="https://gitlab.cern.ch/cara/caimira/-/blob/master/LICENSE" class="ext">Apache 2.0 licensed</a> open-source
software developed at CERN. software developed at CERN.
You can find the source code at <a href="https://gitlab.cern.ch/caimira/caimira">https://gitlab.cern.ch/caimira/caimira</a>, You can find the source code at <a href="https://gitlab.cern.ch/cara/caimira">https://gitlab.cern.ch/cara/caimira</a>,
where we welcome contributions, feature requests and issue reports. where we welcome contributions, feature requests and issue reports.
</p> </p>
</div> </div>

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caimira/models.py
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# This module is part of CAiMIRA. Please see the repository at # This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use. # https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
""" """
This module implements the core CAiMIRA models. This module implements the core CAiMIRA models.

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caimira/scripts/themes/base/caimira_script.command
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cd Downloads cd Downloads
git clone https://gitlab.cern.ch/caimira/caimira.git git clone https://gitlab.cern.ch/cara/caimira.git
cd caimira cd caimira
if [[ `uname -m` == 'arm64' ]]; then if [[ `uname -m` == 'arm64' ]]; then
pip3 install scipy --index-url=https://pypi.anaconda.org/scipy-wheels-nightly/simple pip3 install scipy --index-url=https://pypi.anaconda.org/scipy-wheels-nightly/simple

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caimira/scripts/themes/base/caimira_script.sh
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git clone https://gitlab.cern.ch/caimira/caimira.git git clone https://gitlab.cern.ch/cara/caimira.git
cd caimira cd caimira
pip install -e . pip install -e .
echo "############################################" echo "############################################"

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caimira/scripts/themes/cern/caimira_script.command
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cd Downloads cd Downloads
git clone https://gitlab.cern.ch/caimira/caimira.git git clone https://gitlab.cern.ch/cara/caimira.git
cd caimira cd caimira
if [[ `uname -m` == 'arm64' ]]; then if [[ `uname -m` == 'arm64' ]]; then
pip3 install scipy --index-url=https://pypi.anaconda.org/scipy-wheels-nightly/simple pip3 install scipy --index-url=https://pypi.anaconda.org/scipy-wheels-nightly/simple

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caimira/scripts/themes/cern/caimira_script.sh
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git clone https://gitlab.cern.ch/caimira/caimira.git git clone https://gitlab.cern.ch/cara/caimira.git
cd caimira cd caimira
pip install -e . pip install -e .
echo "############################################" echo "############################################"

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setup.py
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# This module is part of CAiMIRA. Please see the repository at # This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use. # https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
""" """
setup.py for CAiMIRA. setup.py for CAiMIRA.