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Maintained group name (cara)

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Luis Aleixo 2022-09-15 16:41:10 +02:00
parent 6c541952ee
commit 84b7377dff
15 changed files with 18 additions and 18 deletions
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2
.github/workflows/tests.yml vendored
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# This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
name: CI
on:

4
README.md
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@ -76,10 +76,10 @@ In no event shall the authors or copyright holders be liable for any claim, dama
## Running CAiMIRA locally
The easiest way to run a version of CAiMIRA Calculator is to use docker. A pre-built
image of CAiMIRA is made available at https://gitlab.cern.ch/caimira/caimira/container_registry.
image of CAiMIRA is made available at https://gitlab.cern.ch/cara/caimira/container_registry.
In order to run CAiMIRA locally with docker, run the following:
$ docker run -it -p 8080:8080 gitlab-registry.cern.ch/caimira/caimira/calculator
$ docker run -it -p 8080:8080 gitlab-registry.cern.ch/cara/caimira/calculator
This will start a local version of CAiMIRA, which can be visited at http://localhost:8080/.

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app-config/caimira-public-docker-image/run_caimira.sh
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echo 'CAiMIRA is running on http://localhost:8080'
echo 'Please see https://gitlab.cern.ch/caimira/caimira for terms of use.'
echo 'Please see https://gitlab.cern.ch/cara/caimira for terms of use.'
# Run a proxy for the apps (listening on 8080).
nginx -c /opt/caimira/nginx.conf

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app-config/openshift/buildconfig.yaml
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@ -50,7 +50,7 @@
parameters:
- name: GIT_REPO
description: The GIT repo URL
value: 'https://gitlab.cern.ch/caimira/caimira.git'
value: 'https://gitlab.cern.ch/cara/caimira.git'
- name: GIT_BRANCH
description: The name of the GIT branch to use when building the app, e.g. `live/caimira-test` in TEST, `master` in prod
required: true

2
caimira/__init__.py
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# This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
"""
Documentation for the CAiMIRA package

2
caimira/apps/calculator/__init__.py
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# This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
import asyncio
import concurrent.futures

2
caimira/apps/templates/base/calculator.report.html.j2
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@ -343,7 +343,7 @@
{% elif form.virus_type == "SARS_CoV_2_DELTA" %}
<a href="https://www.bmj.com/content/373/bmj.n1513">SARS-CoV-2 (Delta VOC)</a>
{% elif form.virus_type == "SARS_CoV_2_OMICRON" %}
<a href="https://gitlab.cern.ch/caimira/caimira/-/issues/226">SARS-CoV-2 (Omicron VOC)</a>
<a href="https://gitlab.cern.ch/cara/caimira/-/issues/226">SARS-CoV-2 (Omicron VOC)</a>
{% endif %}
</p></li>
<li><p class="data_text">Room Volume: {{ model.concentration_model.room.volume }} m³</p></li>

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caimira/apps/templates/base/index.html.j2
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Please see the <a href="/about">About</a> page for more details on the methodology, assumptions and limitations of CAiMIRA.
</p>
<p>
The full CAiMIRA source code can be accessed freely under an Apache 2.0 open source license from our <a href="https://gitlab.cern.ch/caimira/caimira">code repository</a>.
The full CAiMIRA source code can be accessed freely under an Apache 2.0 open source license from our <a href="https://gitlab.cern.ch/cara/caimira">code repository</a>.
It includes detailed instructions on how to run your own version of this tool.
</p>
<br>
@ -73,7 +73,7 @@
<a href="https://doi.org/10.5281/zenodo.6520432"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.6520432.svg" alt="DOI"></a><br>
© Copyright 2020-2021 CERN. All rights not expressly granted are reserved.<br>
Licensed under the Apache License, Version 2.0<br>
<a href=https://gitlab.cern.ch/caimira/caimira/-/blob/master/LICENSE><i>LICENSE</i></a>
<a href=https://gitlab.cern.ch/cara/caimira/-/blob/master/LICENSE><i>LICENSE</i></a>
</ul>
</p>
</div>

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caimira/apps/templates/base/layout.html.j2
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@ -90,9 +90,9 @@
policy issues. Any initiative is conducted on a best effort and as-is basis, without liability or
warranty.</em></span></p>
<p style="font-size:10px;">
CAiMIRA is <a href="https://gitlab.cern.ch/caimira/caimira/-/blob/master/LICENSE" class="ext">Apache 2.0 licensed</a> open-source
CAiMIRA is <a href="https://gitlab.cern.ch/cara/caimira/-/blob/master/LICENSE" class="ext">Apache 2.0 licensed</a> open-source
software developed at CERN.
You can find the source code at <a href="https://gitlab.cern.ch/caimira/caimira">https://gitlab.cern.ch/caimira/caimira</a>,
You can find the source code at <a href="https://gitlab.cern.ch/cara/caimira">https://gitlab.cern.ch/cara/caimira</a>,
where we welcome contributions, feature requests and issue reports.
</p>
</div>

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caimira/models.py
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# This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
"""
This module implements the core CAiMIRA models.

2
caimira/scripts/themes/base/caimira_script.command
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cd Downloads
git clone https://gitlab.cern.ch/caimira/caimira.git
git clone https://gitlab.cern.ch/cara/caimira.git
cd caimira
if [[ `uname -m` == 'arm64' ]]; then
pip3 install scipy --index-url=https://pypi.anaconda.org/scipy-wheels-nightly/simple

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caimira/scripts/themes/base/caimira_script.sh
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git clone https://gitlab.cern.ch/caimira/caimira.git
git clone https://gitlab.cern.ch/cara/caimira.git
cd caimira
pip install -e .
echo "############################################"

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caimira/scripts/themes/cern/caimira_script.command
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cd Downloads
git clone https://gitlab.cern.ch/caimira/caimira.git
git clone https://gitlab.cern.ch/cara/caimira.git
cd caimira
if [[ `uname -m` == 'arm64' ]]; then
pip3 install scipy --index-url=https://pypi.anaconda.org/scipy-wheels-nightly/simple

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caimira/scripts/themes/cern/caimira_script.sh
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git clone https://gitlab.cern.ch/caimira/caimira.git
git clone https://gitlab.cern.ch/cara/caimira.git
cd caimira
pip install -e .
echo "############################################"

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setup.py
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# This module is part of CAiMIRA. Please see the repository at
# https://gitlab.cern.ch/caimira/caimira for details of the license and terms of use.
# https://gitlab.cern.ch/cara/caimira for details of the license and terms of use.
"""
setup.py for CAiMIRA.