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implement english variant

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markus 2021-02-05 10:49:38 +01:00
parent ee00a19940
commit f82ab3a6d1
1 changed files with 5 additions and 0 deletions
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cara/montecarlo.py
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@ -140,6 +140,9 @@ class MCInfectedPopulation(MCPopulation):
# The quantum infectious dose to be used in the calculations # The quantum infectious dose to be used in the calculations
qid: int qid: int
# A bool indicating whether or not to use the viral loads corresponding to the english variant
english_variant: bool
viral_load: typing.Optional[float] = None viral_load: typing.Optional[float] = None
@functools.lru_cache() @functools.lru_cache()
@ -189,6 +192,8 @@ class MCInfectedPopulation(MCPopulation):
:return: A numpy array of length = samples, containing randomly generated qr-values :return: A numpy array of length = samples, containing randomly generated qr-values
""" """
viral_loads = self._generate_viral_loads() viral_loads = self._generate_viral_loads()
if self.english_variant:
viral_loads += np.log10(11.5)
emission_concentration = self._calculate_emission_concentration() emission_concentration = self._calculate_emission_concentration()