Commit graph

  • a70c32e060 Added xsrf cookie to CO2 requests; lrdossan 2024-06-12 16:14:50 +0200
  • 8524c3f968 changes to reflect schema update 2.0.2 lrdossan 2024-06-05 17:43:10 +0200
  • d25b41b9de Merge branch 'feature/github_update' into 'master' Luis Aleixo 2024-05-27 17:18:29 +0200
  • b90ab86f87 added requirements lrdossan 2024-05-27 16:45:42 +0200
  • e1339e3832 added env variable for running tests lrdossan 2024-05-27 15:53:22 +0200
  • b616bc2ab1 updated conf file of readthedocs lrdossan 2024-05-27 15:53:09 +0200
  • c8b6d882cc Merge branch 'changes/schema_update' into 'master' Luis Aleixo 2024-05-27 11:10:20 +0200
  • fd8f28f888 updated version (minor) Luis Aleixo 2024-05-27 10:51:11 +0200
  • fc03fce082 wrapped data service enabled env. variable in try/except block Luis Aleixo 2024-05-27 10:50:59 +0200
  • ee98b1d308 added breathing cycle to short range dilution factor Luis Aleixo 2024-03-14 16:20:01 +0100
  • 3c3758dfcd removal of viable_to_RNA_ratio_distribution and infectious_dose_distribution from data registry Luis Aleixo 2024-03-14 16:19:38 +0100
  • 39fc9d8e96 handled way to visualize custom value types (namely constant values); handled display of conditional probability plot Luis Aleixo 2024-03-08 10:43:48 +0100
  • 9bc6252a4b added cast to int when fetching env. var. that enables data service Luis Aleixo 2024-03-08 10:07:10 +0100
  • bf0d64063a modifed symptomatic_vl_frequencies to fetch data from registry Luis Aleixo 2024-03-07 17:16:43 +0100
  • 1b5f55fc06 modified data service host (QA) Luis Aleixo 2024-03-07 17:12:01 +0100
  • 3914dabebb changes on custom distributions definitions Luis Aleixo 2024-03-07 17:11:04 +0100
  • c02737cf92 updated schema to reflect v2.0.0 Luis Aleixo 2024-03-07 16:44:31 +0100
  • 74849cdee0 Merge branch 'feature/expected_reproduction_sr' into 'master' Luis Aleixo 2024-05-24 16:56:48 +0200
  • 8ea055a8e1 changed docstring for expected_new_cases method Luis Aleixo 2024-05-23 09:57:03 +0200
  • ac04710d1b ui modifications Luis Aleixo 2024-05-23 09:55:17 +0200
  • aa2e3be2cc replaced max_people_for_sr to max_occupants_for_sr Luis Aleixo 2024-05-23 09:33:48 +0200
  • 0c41b8e98a changed the default value of short_range_occupants to be 0 Luis Aleixo 2024-05-23 09:31:45 +0200
  • a0d8f45424 renamed new input "short_range_total_people" to "short_range_occupants" Luis Aleixo 2024-05-23 09:19:57 +0200
  • e61700aaad added test for expected new cases Luis Aleixo 2024-05-21 11:04:25 +0200
  • 10146f9a18 added baseline model with sr Luis Aleixo 2024-05-21 11:03:59 +0200
  • 04b8e91639 updated new cases method Luis Aleixo 2024-05-17 17:05:10 +0200
  • ed5b0d0e27 minor version update Luis Aleixo 2024-05-15 11:19:14 +0200
  • a54da08789 renamed and moved total_people for short-range interactions to the exposure model Luis Aleixo 2024-05-15 11:17:08 +0200
  • 70dc4a93d6 simplified report logic Luis Aleixo 2024-05-07 16:01:41 +0200
  • 507e586757 re-factor expected new cases method Luis Aleixo 2024-05-07 15:40:07 +0200
  • abd6bb0767 display the input in form Luis Aleixo 2024-05-07 15:17:28 +0200
  • 862010a9e0 added validation Luis Aleixo 2024-05-07 15:17:05 +0200
  • 0352675878 added input to model generator from form Luis Aleixo 2024-05-07 15:16:55 +0200
  • e97a4cc805 added new model input Luis Aleixo 2024-05-07 15:16:29 +0200
  • 3327b6e461 Merge branch 'feature/activity_types_fix' into 'master' Luis Aleixo 2024-05-24 16:14:06 +0200
  • cf99568a70 modified way to restrict pytest version to be installed Luis Aleixo 2024-05-23 14:52:18 +0200
  • 6202ac0874 fixed error in placeholder for secondary school (data registry defaults) Luis Aleixo 2024-05-23 14:47:49 +0200
  • 477e5707c6 Merge branch 'bugfix/r0_short_range' into 'master' Luis Aleixo 2024-04-21 13:07:04 +0200
  • 00b5dc535d fixed bug with expected new cases when short range interactions are defined Luis Aleixo 2024-04-20 13:50:10 +0100
  • 585dba57e9 Merge branch 'changes/form_data_schema_data' into 'master' Luis Aleixo 2024-04-18 10:48:21 +0200
  • 6f537e1df3 updated patch version Luis Aleixo 2024-04-18 10:35:22 +0200
  • 6a69f91c90 added placeholder for activity types and fetched this data directly in form calculator Luis Aleixo 2024-03-11 10:33:49 +0100
  • a843c47b83 Merge branch 'feature/parallel-deposited-exposures-version' into 'master' Luis Aleixo 2024-04-12 15:35:31 +0200
  • f06bb83d30 increased minor version with parallel computing Luis Aleixo 2024-04-11 15:44:40 +0200
  • 5042f5d82f Merge branch 'feature/parallel-deposited-exposures' into 'master' Luis Aleixo 2024-03-26 14:23:34 +0100
  • ddf7684798 added executor factory to ConcentrationModelJsonResponse class Luis Aleixo 2024-03-20 11:32:01 +0100
  • c52d017a31
    model: compute deposited exposures in parallel Nicola Tarocco 2024-03-17 18:12:39 +0100
  • 4ed285d84a Merge branch 'bugfix/env_var_and_report_bug' into 'master' Luis Aleixo 2024-03-11 15:22:47 +0100
  • 24b3eba422 fixed bug on displaying inf. probability > 99.9% Luis Aleixo 2024-03-11 13:45:41 +0100
  • 5e9d6501ae added cast to int when fetching env. variables Luis Aleixo 2024-03-08 11:29:57 +0100
  • 600830a495 Merge branch 'changes/enable_env_vars' into 'master' Luis Aleixo 2024-03-08 09:38:21 +0100
  • b0c9aefe34 disabled data service (OKD template) Luis Aleixo 2024-03-08 09:29:57 +0100
  • c5963a978a Added timeout to fetch method Luis Aleixo 2024-03-06 14:26:35 +0100
  • c8cc0b0908 handled environment variables to be consistent Luis Aleixo 2024-03-05 16:54:08 +0100
  • e0c2e959a2 Merge branch 'update-deps' into 'master' Luis Aleixo 2024-02-28 14:55:06 +0100
  • ddfe0b660e
    tests: make report generation time limit configurable Nicola Tarocco 2024-02-26 11:28:24 +0100
  • d1555d77fc
    upgrade dependencies Nicola Tarocco 2024-02-18 20:18:09 +0100
  • 55850f9971 Merge branch 'feature/profiler' into 'master' Luis Aleixo 2024-02-16 15:29:15 +0100
  • 0590a27fdc Merge branch 'feature/schema_updates' into 'master' Luis Aleixo 2024-02-14 14:49:19 +0100
  • f9d2fc39ec mypy fix Luis Aleixo 2024-02-12 12:10:33 +0100
  • 00dc79f492
    add PyInstrument and cProfile profilers Nicola Tarocco 2024-01-15 23:07:14 +0100
  • c78ffadc02 updated qa to prod in data service fetch Luis Aleixo 2024-01-31 16:39:36 +0100
  • 38376857fa modified activity types Luis Aleixo 2024-01-31 11:50:29 +0100
  • 7199143257 removed authentication methods and tests for data service Luis Aleixo 2024-01-31 11:50:12 +0100
  • d09d6f0ec8 methods updated to reflect changes Luis Aleixo 2024-01-26 10:30:59 +0100
  • b498e776f7 updated data registry to reflect changes in test data service Luis Aleixo 2024-01-26 10:30:37 +0100
  • 667135595c Merge branch 'bugfix/CO2_form' into 'master' Luis Aleixo 2023-12-22 14:26:31 +0100
  • 2deba13950 bugfix Luis Aleixo 2023-12-22 08:37:41 +0000
  • 45b81b1761 Merge branch 'feature/inject-data-service' into 'master' Andre Henriques 2023-12-20 14:44:25 +0100
  • ddecd91a85 increased version Luis Aleixo 2023-12-14 15:45:21 +0100
  • 17a5fa6316 Merge branch 'feature/resizable_histogram' into 'master' Luis Aleixo 2023-12-15 14:49:04 +0100
  • d3daca23d3 updated enum values and removed fixme references Luis Aleixo 2023-12-14 15:44:39 +0100
  • 00ff1af71d fix enums for data service Nicola Tarocco 2023-12-12 19:04:21 +0100
  • d79ef934cb finished injection of data_service param Luis Aleixo 2023-12-12 11:58:19 +0100
  • 20e8bf1df7 added data_service attr where needed Luis Aleixo 2023-12-11 18:00:31 +0100
  • 2abdd130cf config: remove Ref: config parsing Nicola Tarocco 2023-12-08 13:56:55 +0100
  • bb51eaa360 config: inject data registry instance instead of static config Nicola Tarocco 2023-11-29 08:54:58 +0100
  • 1ce1526701 Merge branch 'bugfix/precise_breaks' into 'master' Luis Aleixo 2023-12-14 14:57:17 +0100
  • e0867f1b27 updated minor version Luis Aleixo 2023-12-14 14:49:28 +0100
  • 23c8959244 fixed bug related to specific breaks Luis Aleixo 2023-12-14 14:49:06 +0100
  • 503a831f41 result uncertainties resizable Luis Aleixo 2023-12-13 15:57:57 +0100
  • 18456f4efa Merge branch 'feature/f_inf_in_emission_rate' into 'master' Andre Henriques 2023-12-13 10:50:26 +0100
  • 2244a1dd19 updated concentration and dose labels to "Infectious Respiratory Particles" Luis Aleixo 2023-12-12 16:22:18 +0100
  • 600cee9c9e minor version update Luis Aleixo 2023-12-11 15:12:13 +0100
  • d53d62f3f3 Renaming finf in test_full_algorithm Nicolas Mounet 2023-12-01 17:37:30 +0100
  • c777d1a8de Merge branch 'nimounet-master-patch-52752' into 'master' Andre Henriques 2023-12-12 11:30:42 +0100
  • ece7b22fb7 Update README.md Nicolas Mounet 2023-12-12 11:06:15 +0100
  • 373ff09ea2 Merge branch 'update/fix_package_version_requirements' into 'master' Luis Aleixo 2023-12-01 08:58:23 +0100
  • 1f90d08163 Multiplying all emission rate values by 0.305 (average of uniform distribution of f_inf - 0.01 to 0.6) in test_monte_carlo_full_models, to adapt it to f_inf now included in emission rate Nicolas Mounet 2023-12-01 07:35:07 +0100
  • 605a2d3fb7 Adapting test_full_algorithm to new concentration with f_inf included (f_inf and HI displaced in SimpleConcentrationModel) Nicolas Mounet 2023-12-01 07:33:26 +0100
  • 5b4345e40a Multiplying all known concentrations in test_exposure_model by f_inf=0.5, as concentration is now with f_inf included Nicolas Mounet 2023-12-01 07:32:03 +0100
  • b39131c14c Putting f_inf in emission rate, in models.py, and removing it from dose computation Nicolas Mounet 2023-12-01 07:30:29 +0100
  • e233ea43b1 Updating package requirements in setup.py to make the tests pass locally and to avoid the expert app to crash (mypy, pytest-mypy and ipympl) Nicolas Mounet 2023-11-29 17:31:39 +0100
  • d02404af5d Merge branch 'update/licenses' into 'master' Andre Henriques 2023-11-29 17:11:55 +0100
  • d70029d0ed Merge branch 'feature/CO2_fit' into 'master' Luis Aleixo 2023-11-22 15:43:00 +0100
  • f6abdc91c6 merged tests (custom and fixed) Luis Aleixo 2023-11-22 14:45:57 +0100
  • 15e792a3ee modified UI text for CO2 file upload Luis Aleixo 2023-11-22 14:45:26 +0100
  • 8fddfc3a78 Merge branch 'feature/store-token-validation' into 'master' Luis Aleixo 2023-11-22 13:38:02 +0100
  • eca8e035c4 added test for natural and mechanical ventilation fitting algorithm Luis Aleixo 2023-11-22 10:15:04 +0100
  • 6cad72356d
    data service: add JWT expiration validation Nicola Tarocco 2023-11-21 14:28:35 +0100