Commit graph

  • 96e9aead44 removed manufacture viral load scenarios method and related references Luis Aleixo 2023-08-03 15:01:06 +0200
  • c4d527f1a5 solved seed problem with conditional prob test Luis Aleixo 2023-08-02 14:49:03 +0200
  • 6622315dd9 changed mypy type Luis Aleixo 2023-07-31 17:33:44 +0200
  • b6e1afc2a6 Increased test sample size Luis Aleixo 2023-07-31 17:05:48 +0200
  • 88c23da962 increased sample size Luis Aleixo 2023-07-28 17:39:13 +0200
  • 7d338d3e2d separated vl method and added a test file Luis Aleixo 2023-07-20 12:05:45 +0200
  • fe60e1703f added mypy typing check Luis Aleixo 2023-06-21 12:16:47 +0200
  • b6051778eb modified method to calculate conditional probability Luis Aleixo 2023-06-20 17:19:58 +0200
  • e854efc451 Merge branch 'feature/generic_population_class' into 'master' Nicolas Mounet 2023-07-28 10:39:12 +0200
  • d26218c7e5 Inputing arguments as keywords in populations definition, in test_exposure_model Nicolas Mounet 2023-07-28 10:34:21 +0200
  • 8e877ec357 created a simple population class for the CO2 concentration model Luis Aleixo 2023-07-25 13:18:33 +0200
  • 68bc8cc6a1 Merge branch 'feature/vl_dist' into 'master' Luis Aleixo 2023-07-19 18:32:05 +0200
  • a611188ecc Merge branch 'bugfix/make-data-service-optional' into 'master' Luis Aleixo 2023-07-19 18:28:52 +0200
  • 4b0fc58a3e updated deploymentconfig bool value Luis Aleixo 2023-07-19 18:14:02 +0200
  • e732fb48d7 data service: add toggle env var to make it optional Luis Aleixo 2023-07-19 11:35:47 +0200
  • 3d2e7f57d7 Merge branch 'feature/WP3_first_integration' into 'master' Luis Aleixo 2023-07-18 09:29:14 +0200
  • c9a64a2d92 handled exceptions Luis Aleixo 2023-07-17 17:24:23 +0200
  • f9fb2a12fb added a test file Luis Aleixo 2023-07-11 13:36:36 +0100
  • 38587c43ef added the data service as an external component (class) Luis Aleixo 2023-07-11 13:36:29 +0100
  • 9c33ac1df0 updated server-side logic Luis Aleixo 2023-07-11 13:35:26 +0100
  • 6cc6121075 developed server side API connection to Service Data (WP3) Luis Aleixo 2023-06-16 16:02:47 +0200
  • 43630cda2c added logarithm of viral load distribution to jinja variable Luis Aleixo 2023-07-14 11:23:42 +0200
  • 2d1e8af30f added viral load distribution as a variable to display in the front-end side Luis Aleixo 2023-07-12 17:02:42 +0200
  • fcee962a83 Merge branch 'feature/dose_list' into 'master' Nicolas Mounet 2023-06-29 15:07:00 +0200
  • 07d692b964 expanded pytest raises on tests to each single case Luis Aleixo 2023-06-29 10:02:26 +0100
  • 2ec9a7f262 removed unused block of code Luis Aleixo 2023-06-29 10:01:59 +0100
  • f6579fb31a Merge branch 'feature/CO2_profile' into 'master' Andre Henriques 2023-06-16 14:58:58 +0200
  • 96da4cc980 version update Luis Aleixo 2023-06-15 14:53:52 +0200
  • bacf648dbb Merge branch 'bugfix/histogram' into 'master' Andre Henriques 2023-06-15 10:49:28 +0200
  • 706c352392 removed unused methods Luis Aleixo 2023-06-13 16:00:30 +0200
  • f45ca3904d added logic with IntPiecewiseConstant for dynamic CO2 Luis Aleixo 2023-06-13 15:58:27 +0200
  • a261ac4bf0 added method to combine different present intervals Luis Aleixo 2023-05-02 15:14:07 +0100
  • 4f6a967864 added way to determine size of tooltip Luis Aleixo 2023-04-04 16:58:18 +0200
  • 800578f031 adjustments to d3 plot Luis Aleixo 2023-04-04 15:37:15 +0200
  • 34cdfa536c changed color scheme for build generic graph Luis Aleixo 2023-02-17 16:14:31 +0100
  • bc7dae3610 changed CO2 label and added hlines with legends Luis Aleixo 2023-02-17 15:05:39 +0100
  • b17a1b991a modified draw alternative scenarios method to be a generic plot and added export CO2 cvs data Luis Aleixo 2023-02-16 16:48:40 +0100
  • e67960e035 added methods to generate CO2 model Luis Aleixo 2023-02-15 14:55:26 +0100
  • 6bfebc76d4 added frontend visualisation for CO2 plot Luis Aleixo 2023-02-15 14:53:45 +0100
  • 290ffcf3d0 fixed x attribute for dash line (mean of PI) on histogram Luis Aleixo 2023-06-12 14:22:58 +0200
  • 422d2245c5 dose list implementation Luis Aleixo 2023-06-08 16:46:00 +0200
  • c42c2b0b8b turned infection probability method private Luis Aleixo 2023-06-05 09:46:51 +0200
  • a16957d319 updated deposited_exposure method and infection probability tests Luis Aleixo 2023-05-30 16:54:10 +0200
  • e8cf3d160a adapted dynamic total probability rule Luis Aleixo 2023-05-26 16:34:20 +0200
  • ec54c40785 added probability of infection based on dynamic occupants Luis Aleixo 2023-05-26 16:34:05 +0200
  • 2a3c598488 updated dynamic total_prob_rule method Luis Aleixo 2023-05-17 14:55:43 +0200
  • df77bdd1b5 tests for incidence rate Luis Aleixo 2023-05-15 15:53:57 +0200
  • 77c0c5f3a6 dynamic exposed for incidence rate Luis Aleixo 2023-05-15 15:53:50 +0200
  • f14406de74 Merge branch 'remove-git-lfs' into 'master' Luis Aleixo 2023-06-07 15:01:14 +0200
  • a9ce6d9c8d
    remove Git LFS and change data file URL Nicola Tarocco 2023-06-07 11:39:56 +0200
  • 3355792bd4 Merge branch 'feature/vl_dynamic' into 'master' Andre Henriques 2023-06-02 15:19:20 +0200
  • 4bf8c73d1b fixed spacing issue Luis Aleixo 2023-06-02 14:51:36 +0200
  • a547700779 removed results from report and re-added timeout values Luis Aleixo 2023-06-02 14:44:55 +0200
  • d04869ce16 added generation of conditional probability of infection values based on form condition Luis Aleixo 2023-06-02 14:42:38 +0200
  • 7542683da2 added two more viral load scenarios Luis Aleixo 2023-06-01 17:20:08 +0200
  • 96b6a84b76 improved report generator methods Luis Aleixo 2023-05-31 17:21:53 +0200
  • 207606e97e added more vl values for calculation Luis Aleixo 2023-05-31 16:52:30 +0200
  • ca786d7e7f added results with different viral load values Luis Aleixo 2023-05-30 11:04:38 +0200
  • 3c139fb62d Merge branch 'feature/default_data' into 'master' Luis Aleixo 2023-05-26 11:53:14 +0200
  • 0cb6477cb2 modified file name and references. removed unused variables Luis Aleixo 2023-05-26 09:44:47 +0200
  • 1171e51f90 removed private reference for DEFAULT_DATA variables Luis Aleixo 2023-04-20 16:39:47 +0200
  • 14a6fb73a7 adapted model_generator validation references Luis Aleixo 2023-04-20 16:39:29 +0200
  • 98f6e3446b added default data file Luis Aleixo 2023-04-20 16:39:08 +0200
  • 4808ae4232 Merge branch 'bugfix/static_url' into 'master' Luis Aleixo 2023-05-15 10:38:23 +0200
  • ce99afb965 added static url to base urls Luis Aleixo 2023-05-15 10:23:14 +0200
  • 4e6b7479e6 fixed breaking condition Luis Aleixo 2023-05-15 10:02:11 +0200
  • dad34cdef6 Merge branch 'feature/default_cern_urls' into 'master' Luis Aleixo 2023-05-12 17:15:15 +0200
  • f1b0ad1e30 base urls definition Luis Aleixo 2023-05-12 16:12:28 +0200
  • 170a75a9d0 Merge branch 'feature/env_var_urls' into 'master' Luis Aleixo 2023-05-12 09:20:24 +0200
  • 5525df36eb version update Luis Aleixo 2023-05-12 09:15:25 +0200
  • 77774112e4 added env variable to deploymentconfig template Luis Aleixo 2023-05-11 11:55:56 +0200
  • 0a08b10d0f updated docker-compose file Luis Aleixo 2023-05-11 11:30:09 +0200
  • 18978aef20 adapted deployment configs Luis Aleixo 2023-05-09 17:17:52 +0200
  • 7fd0e0f8ec updated env var EXTRA_PAGES structure Luis Aleixo 2023-05-09 17:13:46 +0200
  • bfe9a7db04 Merge branch 'bugfix/auth-add-missing-scope' into 'master' Luis Aleixo 2023-05-08 14:18:20 +0200
  • eac7591046 modified deployment config Luis Aleixo 2023-05-08 11:49:08 +0200
  • fb18a2a715 added tests for generic pages Luis Aleixo 2023-05-08 10:55:45 +0200
  • 2d3a925fc5 adapted init methods to consider readme and about pages as generic Luis Aleixo 2023-05-08 10:53:50 +0200
  • 3edd1f17bd declared env variable extra_pages Luis Aleixo 2023-05-08 10:53:30 +0200
  • 14e64665d8 Merge branch 'feature/matomo' into 'master' Luis Aleixo 2023-05-05 17:05:04 +0200
  • 74dd8ed6e8 applied matomo script code Luis Aleixo 2023-05-05 16:33:19 +0200
  • 315a0dbc94
    auth: add missing scope to token request for CERN SSO Nicola Tarocco 2023-05-05 16:27:53 +0200
  • 74322c46bb Merge branch 'feature/piecewise_presence' into 'master' Nicolas Mounet 2023-05-03 16:40:09 +0200
  • 7cbe9bb050 updated version Luis Aleixo 2023-05-03 16:35:01 +0200
  • 022abad186 updated branch according to review: - new presence_interval() method in the population class that avoids repetition of if conditions through the code. - typo fix. -tests were updated accordingly Luis Aleixo 2023-04-28 12:05:30 +0200
  • bcb1d1012a modified dynamic tests for InfectedPopulation Luis Aleixo 2023-04-06 12:27:39 +0200
  • fe19cb5976 Change all normalization factors and emission rates (when present) into 'per person' quantities (i.e. do not normalize anymore by the number of infected people) - to allow dynamic number of infected people. Changing the test accordingly, and the documentation. Adding a __post_init__ check in ExposureModel to forbid the use of dynamic number of exposed people, for now. Nicolas Mounet 2023-04-06 10:22:53 +0200
  • e494151d78 added test for dynamic and static population Luis Aleixo 2023-03-29 12:04:36 +0200
  • 801955317f added verifications for unexpected jumps Luis Aleixo 2023-03-16 16:07:35 +0100
  • 70f7e86524 test for dynamic occupants Luis Aleixo 2023-03-15 15:42:57 +0100
  • fe7cbf45b7 added expert apps validation for presence times Luis Aleixo 2023-04-04 11:35:40 +0200
  • 480cf36624 Merge branch 'feature/proportional_interesting_times' into 'master' Luis Aleixo 2023-04-26 15:55:11 +0200
  • a3d66b8463 updated number of points per hour to be 15 instead of 25 Luis Aleixo 2023-04-14 17:20:02 +0200
  • e4636e5fe6 interesting times to be proportional to the simulation time Luis Aleixo 2023-04-05 15:51:30 +0200
  • edb0b2370c Merge branch 'feature/version_pins' into 'master' Andre Henriques 2023-04-24 16:46:35 +0200
  • be828b05b4 fixed mechanical ventilation typo in expert app Luis Aleixo 2023-04-19 16:57:53 +0200
  • 0e1f5b404e typo in mechanival_w Luis Aleixo 2023-04-19 16:02:40 +0200
  • 997344fa5d removed voila and pytest-mypy pins Luis Aleixo 2023-04-19 15:57:01 +0200
  • f6abd5f6fd removed pin from mypy Luis Aleixo 2023-04-18 17:21:21 +0200
  • 249ecff5cc Merge branch 'feature/error_pages' into 'master' Andre Henriques 2023-04-14 09:35:50 +0200