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harmonize unfiform dist in data.py

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This commit is contained in:
Andrejh 2021-09-08 17:40:32 +02:00
parent 8c1ab2f504
commit 2bc31d88f6
1 changed files with 7 additions and 5 deletions
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12
cara/monte_carlo/data.py
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@ -38,28 +38,30 @@ symptomatic_vl_frequencies = LogCustomKernel(
kernel_bandwidth=0.1
)
# From https://doi.org/10.1093/cid/ciaa1579
infectious_virus_distribution = Uniform(0.15, 0.45)
# From CERN-OPEN-2021-04 and refererences therein
virus_distributions = {
'SARS_CoV_2': mc.SARSCoV2(
viral_load_in_sputum=symptomatic_vl_frequencies,
infectious_dose=100,
viable_to_RNA=Uniform(0.15, 0.45),
viable_to_RNA=infectious_virus_distribution,
),
'SARS_CoV_2_B117': mc.SARSCoV2(
viral_load_in_sputum=symptomatic_vl_frequencies,
infectious_dose=60,
viable_to_RNA=Uniform(0.15, 0.45),
viable_to_RNA=infectious_virus_distribution,
),
'SARS_CoV_2_P1': mc.SARSCoV2(
viral_load_in_sputum=symptomatic_vl_frequencies,
infectious_dose=100/2.25,
viable_to_RNA=Uniform(0.15, 0.45),
viable_to_RNA=infectious_virus_distribution,
),
'SARS_CoV_2_B16172': mc.SARSCoV2(
viral_load_in_sputum=symptomatic_vl_frequencies,
infectious_dose=60/1.6,
viable_to_RNA=Uniform(0.15, 0.45),
viable_to_RNA=infectious_virus_distribution,
),
}
@ -73,4 +75,4 @@ mask_distributions = {
'FFP2': mc.Mask(Uniform(0.83, 0.91)),
}
infectious_virus_distribution = Uniform(0.15, 0.45)