Nicolas Mounet
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64565264ea
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Draft Virus distributions (from M. Rognlien) - does not pass mypy tests and can't be cached yet
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2021-05-14 10:44:37 +02:00 |
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Nicolas Mounet
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d5dcfa5a40
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Virus class: input is now qID instead of coefficient_of_infectivity (which remains as a property), as in the CERN note
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2021-05-14 09:15:08 +02:00 |
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Nicolas Mounet
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f07bffaa4a
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Replacing coefficient_of_infectivity by qID in tests
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2021-05-14 09:11:38 +02:00 |
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Phil Elson
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d082156d46
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Follow-up from Andre's review.
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2021-05-12 20:08:38 +02:00 |
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Nicolas Mounet
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b6bb878fc2
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Adding predefined Activity distributions
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2021-05-11 20:00:40 +02:00 |
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Nicolas Mounet
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17ffc4f6f8
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Vectorisation of Activity
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2021-05-11 18:18:19 +02:00 |
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Nicolas Mounet
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1564b9ea65
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Adding tests on vectorisation of Activity inhalation_rate and exhalation_rate
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2021-05-11 18:17:43 +02:00 |
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Philip James Elson
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6df4a86670
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Merge branch 'feature/about_page' into 'master'
Introduce About page
Closes #163 and #117
See merge request cara/cara!177
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2021-05-11 10:20:49 +00:00 |
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Gabriella Azzopardi
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77f52a8087
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Introduce About page
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2021-05-11 10:20:47 +00:00 |
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Philip James Elson
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60568aab35
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Merge branch 'develop/quick_fix_integration' into 'master'
Minor fix in ConcentrationModel.integrated_concentration
See merge request cara/cara!178
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2021-05-10 18:29:57 +00:00 |
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Nicolas Mounet
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bb4bcebe21
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Minor fix in ConcentrationModel.integrated_concentration
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2021-05-10 20:23:54 +02:00 |
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Gabriella Azzopardi
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87c7733bb5
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Merge branch 'feature/error-handling-jinja' into 'master'
Add Jinja error handling details from #117
See merge request cara/cara!167
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2021-05-10 17:29:05 +00:00 |
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Philip James Elson
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9d5743c565
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Merge branch 'develop/improve_dose_integration' into 'master'
Improvement of integration method in quanta_exposure
See merge request cara/cara!176
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2021-05-10 17:13:10 +00:00 |
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Nicolas Mounet
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feedcc0df1
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Add ConcentrationModels.integrated_concentration and provide an analytic solution to the integral.
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2021-05-10 17:13:09 +00:00 |
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Phil Elson
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9d89ba725e
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Spacing between the generate button and the userguide.
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2021-05-10 07:21:42 +02:00 |
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James Devine
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ea5ca699f8
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Update README.md with link to climatology tools repo
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2021-05-06 18:09:00 +00:00 |
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Philip James Elson
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13cf8bafb3
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Merge branch 'develop/time_dependence_concentration_model' into 'master'
Avoid using time-dependence of parameters in concentration computation
See merge request cara/cara!172
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2021-05-06 17:59:56 +00:00 |
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Nicolas Mounet
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7d4284e5f9
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Correcting test_next_state_change_time
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2021-05-06 06:07:33 +02:00 |
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Phil Elson
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31a5954a4a
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Review actions on time handling.
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2021-05-05 21:03:36 +02:00 |
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Nicolas Mounet
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f613ff80ba
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Supressing now useless (wrong) tests on time-independence of parameters in ConcentrationModel; adding a test on error handling if time used for concentration computation is beyond the last state change time
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2021-05-05 12:46:27 +02:00 |
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Nicolas Mounet
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817ca8f3bf
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ConcentrationModel: _next_state_change used only in concentration function, now; improving docstrings and error handling
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2021-05-05 12:45:02 +02:00 |
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Nicolas Mounet
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ac866491df
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Adding docstrings in DummyPopulation and DummyVentilation (test_concentration_model)
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2021-05-04 09:03:45 +02:00 |
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Nicolas Mounet
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717390377e
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concentration_limit method not public anymore; providing a docstring
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2021-05-04 08:57:40 +02:00 |
|
Nicolas Mounet
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236a7139f5
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Adding a test for next_state_change in ConcentrationModel
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2021-05-04 08:49:02 +02:00 |
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Nicolas Mounet
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f8b565ea5b
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Avoid next_state_change to be public in ConcentrationModel; raise an error if time is higher than largest transition time
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2021-05-04 07:27:58 +02:00 |
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Phil Elson
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a1000eb3ec
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First steps towards making the form reponsive to screensize.
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2021-05-04 07:08:35 +02:00 |
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Nicolas Mounet
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94d01104d0
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Using concentration_limit method in concentration (ConcentrationModel)
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2021-05-04 06:43:27 +02:00 |
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Nicolas Mounet
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68893f905f
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Merge branch 'master' of https://gitlab.cern.ch/cara/cara into develop/time_dependence_concentration_model
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2021-05-04 06:37:00 +02:00 |
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Philip James Elson
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9e3adf30b0
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Merge branch 'feature/model_vectorisation_pt3' into 'master'
Vectorise ExposureModel
See merge request cara/cara!163
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2021-05-04 04:31:46 +00:00 |
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Nicolas Mounet
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99c0e4e1f8
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Extending vectorised tests to expected_new_cases
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2021-05-04 05:57:21 +02:00 |
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Andre Henriques
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54ad996d0b
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Merge branch 'feature/docker-calculator' into 'master'
Add a dockerfile and details of how to run it
See merge request cara/cara!171
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2021-05-03 21:03:02 +00:00 |
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Nicolas Mounet
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c3cf37d3da
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Simplifying test_exposure_model (towards unit tests rather than integration tests)
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2021-05-03 22:22:25 +02:00 |
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Phil Elson
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178ee72fe3
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Add a dockerfile and details of how to run it.
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2021-05-03 20:10:44 +02:00 |
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Andre Henriques
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0422132d65
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Merge branch 'readme_citation_style' into 'master'
typo in heading style
See merge request cara/cara!170
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2021-05-03 15:13:50 +00:00 |
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Andre Henriques
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a3ad121f71
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typo in heading style
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2021-05-03 15:11:45 +00:00 |
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Nicolas Mounet
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2e928b5fef
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Merge branch 'master' of https://gitlab.cern.ch/cara/cara into feature/model_vectorisation_pt3
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2021-05-03 17:09:54 +02:00 |
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Philip James Elson
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f0d8da7361
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Merge branch 'author_citation' into 'master'
Add authorship and citation to README.md
See merge request cara/cara!169
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2021-05-03 14:28:24 +00:00 |
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Philip James Elson
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e02396514e
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Merge branch 'develop/hours2time_in_concentration_plot' into 'master'
Better xtick labels in concentration plots
See merge request cara/cara!165
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2021-05-03 14:27:30 +00:00 |
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Nicolas Mounet
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26d7ef9f5d
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Replacing the use of hours2timestring by datetimes, in the x-axis of the plots generated in report_generator
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2021-05-03 14:27:29 +00:00 |
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Andre Henriques
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54b2fc96ef
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add NTNU for Markus
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2021-05-03 13:03:49 +00:00 |
|
Nicolas Mounet
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8b1571dcf1
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Exposing concentration_limit in ConcentrationModel
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2021-05-03 15:01:42 +02:00 |
|
Nicolas Mounet
|
d0ef2f13c9
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Adding test on concentration limit in concentration model
|
2021-05-03 15:01:02 +02:00 |
|
Andre Henriques
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7abd6dd65b
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Add authorship and citation to README.md
|
2021-05-03 12:57:47 +00:00 |
|
Andre Henriques
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99152f7e44
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Merge branch 'fix/license_headers' into 'master'
Compromise on the header information added to key files
See merge request cara/cara!168
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2021-05-03 12:46:21 +00:00 |
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Phil Elson
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05dffa3f50
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Compromise on the header information added to key files, ensuring that the details are correct, but are canonically defined in one place.
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2021-05-03 13:46:03 +02:00 |
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Phil Elson
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d1f22a03a7
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Re-instate all error handling details from #117.
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2021-05-03 13:40:15 +02:00 |
|
Andre Henriques
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58006ebe5f
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Merge branch 'feature/OSS_license' into 'master'
Prepare the repository for an Apache 2.0 license
See merge request cara/cara!161
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2021-05-03 11:38:43 +00:00 |
|
Gabriella Azzopardi
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5a6711be3e
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Merge branch 'feature/md_text_blocks' into 'master'
Implement common markdown blocks infrastructure
See merge request cara/cara!166
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2021-05-03 11:33:18 +00:00 |
|
Philip James Elson
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49c28aaa98
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Implement common markdown blocks infrastructure
|
2021-05-03 11:33:17 +00:00 |
|
Nicolas Mounet
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b622283206
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In concentration model, compute infectious virus removal rate only at time of next state change, to make sure it stays constant
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2021-05-03 12:35:10 +02:00 |
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