Commit graph

98 commits

Author SHA1 Message Date
lrdossan
fa38282186 removed aerosols_without_mask in order to always use aerosols method with the correction conversion factor 2024-07-05 12:09:27 +02:00
lrdossan
7cb762ec1f fixed error with f_inf (short-range) 2024-07-05 12:09:26 +02:00
lrdossan
c5cbd23cdd use "deactivated" concept instead of "deprecated" 2024-06-28 13:44:38 +01:00
lrdossan
f3fde95792 expert application (virus and CO2) are not anymore be maintained 2024-06-18 17:09:34 +02:00
Luis Aleixo
3c3758dfcd removal of viable_to_RNA_ratio_distribution and infectious_dose_distribution from data registry 2024-05-27 10:42:46 +02:00
Luis Aleixo
a0d8f45424 renamed new input "short_range_total_people" to "short_range_occupants" 2024-05-24 16:42:03 +02:00
Luis Aleixo
e61700aaad added test for expected new cases 2024-05-24 16:42:03 +02:00
Luis Aleixo
10146f9a18 added baseline model with sr 2024-05-24 16:42:03 +02:00
Luis Aleixo
c5963a978a Added timeout to fetch method 2024-03-06 14:26:35 +01:00
Nicola Tarocco
ddfe0b660e
tests: make report generation time limit configurable 2024-02-27 21:17:46 +01:00
Luis Aleixo
7199143257 removed authentication methods and tests for data service 2024-01-31 11:50:12 +01:00
Luis Aleixo
d79ef934cb finished injection of data_service param 2023-12-14 15:34:08 +01:00
Luis Aleixo
20e8bf1df7 added data_service attr where needed 2023-12-14 15:34:08 +01:00
Nicola Tarocco
bb51eaa360 config: inject data registry instance instead of static config
* closes #365
2023-12-14 15:34:08 +01:00
Luis Aleixo
23c8959244 fixed bug related to specific breaks 2023-12-14 14:49:06 +01:00
Nicolas Mounet
d53d62f3f3 Renaming finf in test_full_algorithm 2023-12-12 16:23:07 +01:00
Nicolas Mounet
1f90d08163 Multiplying all emission rate values by 0.305 (average of uniform distribution of f_inf - 0.01 to 0.6) in test_monte_carlo_full_models, to adapt it to f_inf now included in emission rate 2023-12-01 07:35:07 +01:00
Nicolas Mounet
605a2d3fb7 Adapting test_full_algorithm to new concentration with f_inf included (f_inf and HI displaced in SimpleConcentrationModel) 2023-12-01 07:33:26 +01:00
Nicolas Mounet
5b4345e40a Multiplying all known concentrations in test_exposure_model by f_inf=0.5, as concentration is now with f_inf included 2023-12-01 07:32:03 +01:00
Luis Aleixo
d70029d0ed Merge branch 'feature/CO2_fit' into 'master'
Fit ventilation and exhalation rates on CO2 sensor data

See merge request caimira/caimira!444
2023-11-22 15:43:00 +01:00
Luis Aleixo
f6abdc91c6 merged tests (custom and fixed) 2023-11-22 14:45:57 +01:00
Luis Aleixo
eca8e035c4 added test for natural and mechanical ventilation fitting algorithm 2023-11-22 10:15:04 +01:00
Nicola Tarocco
6cad72356d
data service: add JWT expiration validation 2023-11-21 14:34:05 +01:00
Luis Aleixo
3da67c8c95 add superclass FormData for CO2FormData and VirusFormData 2023-11-21 09:45:42 +01:00
Luis
ac2e8b799d Added validation for the case the header is not a string 2023-11-21 09:45:41 +01:00
Luis Aleixo
ddfe158467 added report data 2023-11-21 09:42:15 +01:00
Luis Aleixo
e75846a3b2 generate initial CO2 plot 2023-11-21 09:40:27 +01:00
Nicola Tarocco
035190564c
refactor data service 2023-11-16 16:11:49 +01:00
Luis Aleixo
ef212f9455 moved data service to separate module and removed logic from caimira calculator module 2023-10-26 16:27:27 +02:00
Luis Aleixo
c8f2b32fef modified CO2 concentration when ventilation is close to 0. (RR) 2023-10-04 16:00:11 +02:00
Nicolas Mounet
878e4b26cd Increasing number of samples in test_conditional_probability.py 2023-09-02 11:21:17 +02:00
Nicolas Mounet
82f4e14905 relaxing tolerances on conditional prob. test 2023-09-01 16:18:10 +02:00
Nicolas Mounet
f8530d4724 Centering the interval for vl uncertainty computation in report generator -> improving test accuracy 2023-09-01 15:21:04 +02:00
Luis Aleixo
c4d527f1a5 solved seed problem with conditional prob test 2023-08-02 14:49:03 +02:00
Luis Aleixo
b6e1afc2a6 Increased test sample size 2023-07-31 17:05:48 +02:00
Luis Aleixo
88c23da962 increased sample size 2023-07-28 17:39:17 +02:00
Luis Aleixo
7d338d3e2d separated vl method and added a test file 2023-07-28 17:39:17 +02:00
Nicolas Mounet
d26218c7e5 Inputing arguments as keywords in populations definition, in test_exposure_model 2023-07-28 10:34:21 +02:00
Luis Aleixo
8e877ec357 created a simple population class for the CO2 concentration model 2023-07-25 13:18:33 +02:00
Luis Aleixo
e732fb48d7 data service: add toggle env var to make it optional 2023-07-19 11:39:39 +02:00
Luis Aleixo
f9fb2a12fb added a test file 2023-07-17 17:28:09 +02:00
Luis Aleixo
07d692b964 expanded pytest raises on tests to each single case 2023-06-29 10:02:26 +01:00
Luis Aleixo
422d2245c5 dose list implementation 2023-06-08 16:46:05 +02:00
Luis Aleixo
a16957d319 updated deposited_exposure method and infection probability tests 2023-06-08 16:46:05 +02:00
Luis Aleixo
df77bdd1b5 tests for incidence rate 2023-06-08 16:46:05 +02:00
Luis Aleixo
1171e51f90 removed private reference for DEFAULT_DATA variables 2023-05-25 16:43:45 +02:00
Luis Aleixo
7fd0e0f8ec updated env var EXTRA_PAGES structure 2023-05-09 17:13:46 +02:00
Luis Aleixo
fb18a2a715 added tests for generic pages 2023-05-08 11:18:11 +02:00
Luis Aleixo
2d3a925fc5 adapted init methods to consider readme and about pages as generic 2023-05-08 10:55:02 +02:00
Luis Aleixo
022abad186 updated branch according to review: - new presence_interval() method in the population class that avoids repetition of if conditions through the code. - typo fix. -tests were updated accordingly 2023-04-28 12:05:30 +02:00