Nicolas Mounet
ad97a6b18c
Merge branch 'optimisation/better_concentration_caching' into 'master'
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Optimisation: Improve the caching of concentration(time) calls by ensuring that floats are used throughout the cara codebase when representing time
See merge request cara/cara!238
2021-08-06 09:53:50 +00:00
Phil Elson
0e71ace0d9
Implement bisection algorithm for finding the most recent state change.
2021-08-06 11:52:14 +02:00
Phil Elson
43b9b864af
Improve the testing of ConcentrationModel.last_state_change
2021-08-06 11:52:14 +02:00
Phil Elson
9546c1966c
Rename _concentration_at_state_change to _concentration_cached.
2021-08-06 11:50:06 +02:00
Luis Aleixo
b2d794316a
Merge branch 'master' into feature/virions_plot
2021-08-06 11:41:55 +02:00
Luis Aleixo
f5ee4c3882
updated Yan data
2021-08-06 11:36:23 +02:00
Phil Elson
aa269aaf6e
Use floats throughout the cara codebase to represent time.
2021-08-06 10:39:41 +02:00
Philip James Elson
e1d8b3a2c8
Merge branch 'feature/virology_parameters' into 'master'
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ER and P(I) formulas update according to qID parameter
Closes #184
See merge request cara/cara!236
2021-08-06 08:24:28 +00:00
Luis Aleixo
acbf676a28
Remove the concept of quanta in the model, focusing instead on virons.
2021-08-06 08:24:25 +00:00
Philip James Elson
e3e49b5de7
Merge branch 'feature/plotting_d3' into 'master'
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Feature/plotting time vs concentration using d3 library
Closes #183
See merge request cara/cara!233
2021-08-06 08:18:40 +00:00
Luis Aleixo
acf14c05cd
Use d3 for the concentration line plot in the report
2021-08-06 08:18:40 +00:00
Andrejh
60cb0ef455
update plot labels
2021-08-06 09:55:37 +02:00
Luis Aleixo
d33affa36f
added points from file into the plot
2021-08-05 17:39:57 +02:00
Andre Henriques
5e781bbb4b
Merge branch 'lrdossan-master-patch-47603' into 'master'
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Attribute Luis' contribution
See merge request cara/cara!237
2021-08-05 14:24:52 +00:00
Luis Aleixo
077737b2cb
Update index.html.j2 with luis' contribution
2021-08-05 14:07:22 +00:00
Luis Aleixo
cc4fb7cd3a
Update luis' contribuion on README
2021-08-05 14:06:14 +00:00
Luis Aleixo
8daa03881c
deleted unused file
2021-08-05 15:28:06 +02:00
Luis Aleixo
e7decf52b2
update report_generator according to previous version
2021-08-05 15:11:28 +02:00
Luis Aleixo
81dcbcd39e
file used to plot and write data
2021-08-05 15:10:21 +02:00
Luis Aleixo
2988f2085b
files division
2021-08-05 14:40:08 +02:00
Luis Aleixo
90040a62a2
plot with log scale on y axis
2021-08-05 13:40:57 +02:00
Luis Aleixo
ae085826dd
plot fig
2021-08-05 09:58:22 +02:00
Luis Aleixo
d03ff7f4f0
added model_scenario
2021-08-05 09:41:01 +02:00
Luis Aleixo
9f48be9840
Update README.md
2021-08-04 13:21:16 +00:00
Luis Aleixo
b59ae0236d
tab missing
2021-08-04 14:16:48 +02:00
Luis Aleixo
f614027b02
test_exposure_model values adjustments
2021-08-04 14:07:01 +02:00
Luis Aleixo
5ddddf10f8
Changed 'infectious virus' to 'virions'
2021-08-04 13:36:52 +02:00
Luis Aleixo
415ade0185
single test for infectious_dose_vectorisation fix #184
2021-08-04 11:43:58 +02:00
Luis Aleixo
57b91fccdb
cern yellow warning bug fix
2021-08-04 10:56:24 +02:00
Luis Aleixo
c111cb6454
results component vertically aligned
2021-08-04 10:46:26 +02:00
Luis Aleixo
5f652a8edc
bug with Applicable rules tab solved
2021-08-04 10:29:20 +02:00
Luis Aleixo
b9143727a0
text-size larger and qr code expanded
2021-08-04 10:21:07 +02:00
Luis Aleixo
160dcf6a60
test_infectious_dose_vectorisation code implementation
2021-08-04 09:59:04 +02:00
Luis Aleixo
c1938889b8
test_infected_population_vectorisation and test_concentration_model_vectorisation tests fix
2021-08-03 16:11:59 +02:00
Luis Aleixo
9a43db9c5a
other variable names
2021-08-03 15:33:40 +02:00
Luis Aleixo
4b63281f02
test update with new values
2021-08-03 15:27:28 +02:00
Luis Aleixo
f6340d7986
added logic behing ER and concentration (model)
2021-08-03 13:45:14 +02:00
Luis Aleixo
0935056df2
variable renaming (remove quantum)
2021-08-03 11:22:08 +02:00
Luis Aleixo
52c4eb7c2c
Revert "variables renaming (removal of quantum)"
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This reverts commit ae4db5a4b0
2021-08-03 11:18:44 +02:00
Luis Aleixo
ae4db5a4b0
variables renaming (removal of quantum)
2021-08-03 11:10:57 +02:00
Luis Aleixo
5523fe28dc
Input data with different cards and min height for animation css
2021-08-02 17:18:01 +02:00
Luis Aleixo
bb968e58e6
added correct colors for warning animation
2021-08-02 14:07:13 +02:00
Luis Aleixo
75ae089f55
Alternative scenarios collapse tab start "closed"
2021-08-02 11:44:48 +02:00
Luis Aleixo
38a68e2da5
New tab added - report preamble
2021-08-02 11:41:25 +02:00
Philip James Elson
2645ff2a43
Merge branch 'feature/check-oc-config-prod' into 'master'
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Align the dev and prod openshift configs, and validate that they remain correct
See merge request cara/cara!230
2021-07-31 04:04:23 +00:00
Philip James Elson
ec724a5a3f
Merge branch 'fix/move-expert-app-into-package' into 'master'
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Fix the expert app, as the new docker image did not support running as non-root
See merge request cara/cara!235
2021-07-30 15:57:43 +00:00
Phil Elson
af3fe421db
Fix the expert app, as the new docker image did not support running as non-root.
2021-07-30 17:53:19 +02:00
Luis Aleixo
4d7be0339c
deleted images not in usage
2021-07-30 15:37:40 +02:00
Luis Aleixo
3b7959a01d
added bootstrap animation to percentage of infection
2021-07-30 15:37:04 +02:00
Luis Aleixo
c8270aee79
Collapsible sections order changed
2021-07-30 14:30:12 +02:00
