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Author SHA1 Message Date
Luis Aleixo
0348065515 Userguide specific event update 2022-02-09 10:25:51 +00:00
Luis Aleixo
98e7da33d4 Added user guide and quick guide notes on specific events. AB comment. 2022-02-09 10:25:51 +00:00
Luis Aleixo
931a3320b9 Changed not recurrent event to specific event 2022-02-09 10:25:51 +00:00
Luis Aleixo
95d0afc52f Changed variable name 2022-02-09 10:25:51 +00:00
Luis Aleixo
e487953a61 Final implementation for total_probability_rule with geographic population and cases 2022-02-09 10:25:47 +00:00
Luis Aleixo
a3a44e5e89 Logic for the probability that an individual is infected and how to use it in CARA 2022-02-09 10:23:59 +00:00
Philip Elson
d0ce546374 Merge branch 'feature/cern_thresholds' into 'master' 
Set new logic for the cern_level color variable

See merge request cara/cara!326
 2022-02-08 13:41:18 +01:00
Philip Elson
da5b3bc8fb Merge branch 'fix/remove-debug-auth-service' into 'master' 
Auth service: pass debug option as CLI arg

Closes #237

See merge request cara/cara!328
 2022-02-08 13:40:37 +01:00
Andre Henriques
9dc8237987 Merge branch 'feature/correct_plot_labels' into 'master' 
modify label names and delete plot title

See merge request cara/cara!327
 2022-02-08 11:26:07 +01:00
Andre Henriques
49221a32a4 modify label names and delete plot title 2022-02-08 10:20:41 +00:00
Nicola Tarocco
99de3e2ebd Auth service: pass debug option as CLI arg 
* closes #237
 2022-02-08 10:24:11 +01:00
Andre Henriques
7e61cc33e5 Merge branch 'feature/cumulative_inf_aero' into 'master' 
Method to calculate the deposited_exposure between two times

See merge request cara/cara!322
 2022-02-04 10:38:22 +01:00
Luis Aleixo
60cacfe9a1 Changed inf_aero variable name 2022-02-03 17:21:26 +01:00
Luis Aleixo
fb15b6f451 changed and added tests on test_exposure_model 2022-02-03 15:25:39 +01:00
Luis Aleixo
8855dfc75a Changed test values on test_monte_carlo_full_models 2022-02-03 15:14:33 +01:00
Luis Aleixo
2a43fffec9 changed docstring on models.py for the deposited_expoure method 2022-02-03 10:55:06 +01:00
Luis Aleixo
fee2bcab86 Changed test values on test_known_quantities 2022-02-03 10:54:44 +01:00
Luis Aleixo
c24853516b Changed test_monte_carlo.py exposure method 2022-02-03 10:10:53 +01:00
Luis Aleixo
dd77ba5090 added self.repeats to the deposited exposure calculation 2022-02-02 17:24:41 +01:00
Luis Aleixo
b7007ae345 deposited exposure as public method 2022-02-02 17:03:23 +01:00
Luis Aleixo
996230333c Set new logic for the cern_level color variable 2022-02-02 12:23:17 +01:00
Luis Aleixo
fbe47fa4d4 Removed exposure_between_bounds and exposure methods; created a deposited_exposure_between_bounds that considers the previous inf_aero; created deposited_exposure method that calls the deposited_exposure_between_bounds within start and stop times during the day; consider these methods to calculate the cumulative dose 2022-02-02 11:27:46 +01:00
Andre Henriques
584031e006 Merge branch 'feature/version_update' into 'master' 
CARA version update following MR 307

See merge request cara/cara!325
 2022-02-01 17:35:44 +01:00
Luis Aleixo
b5fd442c67 Version update 2022-02-01 17:26:30 +01:00
Andre Henriques
28a59fc075 Merge branch 'feature/pi_thresholds_animation' into 'master' 
Updated missing threshold values on CERN applicable rules

Closes #244

See merge request cara/cara!324
 2022-02-01 16:53:55 +01:00
Luis Aleixo
b813ce505b Updated missing threshold values on CERN applicable rules 2022-02-01 16:48:01 +01:00
Andre Henriques
b84d63ae25 Merge branch 'feature/pi_thresholds' into 'master' 
New threshold values on CERN theme

Closes #244

See merge request cara/cara!323
 2022-02-01 14:38:14 +01:00
Andre Henriques
a645263c31 Merge branch 'feature/scientific_model_update' into 'master' 
Model updates with virology parameters

See merge request cara/cara!307
 2022-02-01 14:06:07 +01:00
Luis Aleixo
02468f42fa updated threshold values 2022-02-01 12:14:49 +01:00
Luis Aleixo
3e4aa09eee Moved SAMPLE_SIZE and TOLERANCE to the respective test where they are used 2022-02-01 09:30:41 +01:00
Luis Aleixo
68d495ee8e Move toronto temperatures into test_monte_carlo_full_models where it is used 2022-01-28 11:18:47 +01:00
Nicolas Mounet
7af1abcde6 Minor fixes in cara/models.py 2022-01-27 15:38:25 +01:00
Andre Henriques
3b89ce1e43 Merge branch 'feature/covid_level_text' into 'master' 
Covid level text update

See merge request cara/cara!321
 2022-01-27 13:25:08 +01:00
Nicolas Mounet
8b485e80a7 Bug fix in Exposure class (cara/models.py) 2022-01-27 10:39:15 +01:00
Nicolas Mounet
46146b2a45 Improving fraction_deposited docstrings (in cara/models.py) 2022-01-27 10:14:43 +01:00
Nicolas Mounet
5302001ed9 Restructuring exposure class to avoid smelly code (cara/models.py) 2022-01-26 20:47:28 +01:00
Luis Aleixo
6b8f71048a Added covid level variable comments on the code for future reference. 2022-01-26 17:46:54 +01:00
Luis Aleixo
10565bd448 Updated covid level text 2022-01-26 17:14:52 +01:00
Luis Aleixo
b7a9a724a7 Merge branch 'master' into feature/scientific_model_update 2022-01-26 15:18:42 +01:00
Andre Henriques
c4fbb03adf Merge branch 'feature/numpy_updates' into 'master' 
Adapted code to the new numpy version

Closes #233

See merge request cara/cara!320
 2022-01-26 14:58:08 +01:00
Nicolas Mounet
9b1a324369 Minor change in models: particle methods changed into properties 2022-01-26 14:23:31 +01:00
Nicolas Mounet
c9329da4d1 models.py: some re-structuring to removing some code-smells (introduction of a Particle class where settling velocity and deposited fraction are computed) 2022-01-26 13:03:37 +01:00
Nicolas Mounet
9da5b5b929 Improving docstring for cn in Expiration class 2022-01-25 22:53:41 +01:00
Luis Aleixo
aae45ad456 Merge branch 'master' into feature/scientific_model_update 2022-01-25 17:21:53 +01:00
Luis Aleixo
d8e8398eeb Adapted code to new numpy version 2022-01-24 16:07:23 +01:00
Luis Aleixo
0a6472bdbf oneoverln2 back on the header of models.py 2022-01-17 14:09:24 +01:00
Luis Aleixo
f5f0365725 Added cn reference to the code 2022-01-17 14:01:40 +01:00
Luis Aleixo
8b6f399e02 Merge branch 'feature/openshift_template_router' into 'master' 
Updated config-fetch and config-generate for routes.yaml

See merge request cara/cara!319
 2022-01-13 17:43:30 +01:00
Luis Aleixo
008efd3467 Updated config-fetch and config-generate for routes.yaml 2022-01-13 17:38:02 +01:00
Luis Aleixo
7dd6e93e0d Merge branch 'feature/openshift_template_router' into 'master' 
README update concerning routes.yaml

See merge request cara/cara!318
 2022-01-13 17:14:29 +01:00