Commit graph

2335 commits

Author SHA1 Message Date
lrdossan
cab9a85703 changed docstring (interpolation: integration) 2024-07-12 12:10:29 +02:00
lrdossan
d4455aaa27 added type hint for axes (matplotlib update) 2024-07-11 17:34:35 +02:00
lrdossan
56550c4406 updated docstrings for virions vs. IRP 2024-07-11 16:23:53 +02:00
lrdossan
e0fa8fd0d2 updated version 2024-07-05 12:17:35 +02:00
lrdossan
d3034ffe07 added reference to the normalization factor in the short-range class 2024-07-05 12:09:28 +02:00
lrdossan
e07fd2b872 applied changes to docstrings 2024-07-05 12:09:28 +02:00
lrdossan
9e3782268c minor update in docstring 2024-07-05 12:09:28 +02:00
lrdossan
ddaa77b1c9 added the fraction of infectious virus method in the test full algorithm file 2024-07-05 12:09:28 +02:00
lrdossan
7924af041f adapted comments and docstrings of some methods 2024-07-05 12:09:27 +02:00
lrdossan
fa38282186 removed aerosols_without_mask in order to always use aerosols method with the correction conversion factor 2024-07-05 12:09:27 +02:00
lrdossan
f59d56ed16 adjusted the normalization factor for short-range 2024-07-05 12:09:27 +02:00
lrdossan
0d2eaa99f8 added f_inf to the normalization factor of short-range 2024-07-05 12:09:27 +02:00
lrdossan
c78d8bf7e7 refined methods for short_range emission rate 2024-07-05 12:09:27 +02:00
lrdossan
7cb762ec1f fixed error with f_inf (short-range) 2024-07-05 12:09:26 +02:00
Andre Henriques
e1a94b9067 Merge branch 'changes/caimira_schema_2.0.2' into 'master'
Changes to reflect schema update 2.0.2

See merge request caimira/caimira!497
2024-07-05 09:56:54 +02:00
Andre Henriques
a28b4d8310 Merge branch 'changes/deprecate_expert_apps' into 'master'
Deprecate ExpertApplication and CO2Application

See merge request caimira/caimira!501
2024-07-05 09:51:59 +02:00
lrdossan
c5cbd23cdd use "deactivated" concept instead of "deprecated" 2024-06-28 13:44:38 +01:00
lrdossan
fcbfdf2eae Added correct version and updated readme 2024-06-25 08:59:54 +02:00
lrdossan
ecdbb1c2b3 added redirect 2024-06-25 08:19:38 +02:00
lrdossan
a964c08090 update readme 2024-06-24 17:24:07 +02:00
lrdossan
16a417a817 removed deployment related configuration on expert apps 2024-06-24 17:23:58 +02:00
lrdossan
4bed754f21 increased version 2024-06-24 17:12:32 +02:00
lrdossan
6cc5a8e01e added deprecation template for expert apps 2024-06-24 17:12:26 +02:00
Luis Aleixo
c54b37a37c Merge branch 'changes/xsrf_cookie_CO2' into 'master'
Added xsrf cookie to CO2 requests

See merge request caimira/caimira!500
2024-06-21 17:30:43 +02:00
lrdossan
38de73f1d6 Updates readme 2024-06-18 17:09:40 +02:00
lrdossan
f3fde95792 expert application (virus and CO2) are not anymore be maintained 2024-06-18 17:09:34 +02:00
lrdossan
a70c32e060 Added xsrf cookie to CO2 requests; 2024-06-12 16:14:50 +02:00
lrdossan
8524c3f968 changes to reflect schema update 2.0.2 2024-06-05 17:43:10 +02:00
Luis Aleixo
d25b41b9de Merge branch 'feature/github_update' into 'master'
Github update

See merge request caimira/caimira!495
2024-05-27 17:18:29 +02:00
lrdossan
b90ab86f87 added requirements 2024-05-27 17:09:43 +02:00
lrdossan
e1339e3832 added env variable for running tests 2024-05-27 15:53:22 +02:00
lrdossan
b616bc2ab1 updated conf file of readthedocs 2024-05-27 15:53:09 +02:00
Luis Aleixo
c8b6d882cc Merge branch 'changes/schema_update' into 'master'
Data registry update (schema v2.1.1)

See merge request caimira/caimira!487
2024-05-27 11:10:20 +02:00
Luis Aleixo
fd8f28f888 updated version (minor) 2024-05-27 10:51:11 +02:00
Luis Aleixo
fc03fce082 wrapped data service enabled env. variable in try/except block 2024-05-27 10:50:59 +02:00
Luis Aleixo
ee98b1d308 added breathing cycle to short range dilution factor 2024-05-27 10:42:46 +02:00
Luis Aleixo
3c3758dfcd removal of viable_to_RNA_ratio_distribution and infectious_dose_distribution from data registry 2024-05-27 10:42:46 +02:00
Luis Aleixo
39fc9d8e96 handled way to visualize custom value types (namely constant values); handled display of conditional probability plot 2024-05-27 10:42:46 +02:00
Luis Aleixo
9bc6252a4b added cast to int when fetching env. var. that enables data service 2024-05-27 10:42:46 +02:00
Luis Aleixo
bf0d64063a modifed symptomatic_vl_frequencies to fetch data from registry 2024-05-27 10:42:46 +02:00
Luis Aleixo
1b5f55fc06 modified data service host (QA) 2024-05-27 10:42:46 +02:00
Luis Aleixo
3914dabebb changes on custom distributions definitions 2024-05-27 10:42:46 +02:00
Luis Aleixo
c02737cf92 updated schema to reflect v2.0.0 2024-05-27 10:42:46 +02:00
Luis Aleixo
74849cdee0 Merge branch 'feature/expected_reproduction_sr' into 'master'
Expected number of new cases fix

See merge request caimira/caimira!493
2024-05-24 16:56:48 +02:00
Luis Aleixo
8ea055a8e1 changed docstring for expected_new_cases method 2024-05-24 16:42:03 +02:00
Luis Aleixo
ac04710d1b ui modifications 2024-05-24 16:42:03 +02:00
Luis Aleixo
aa2e3be2cc replaced max_people_for_sr to max_occupants_for_sr 2024-05-24 16:42:03 +02:00
Luis Aleixo
0c41b8e98a changed the default value of short_range_occupants to be 0 2024-05-24 16:42:03 +02:00
Luis Aleixo
a0d8f45424 renamed new input "short_range_total_people" to "short_range_occupants" 2024-05-24 16:42:03 +02:00
Luis Aleixo
e61700aaad added test for expected new cases 2024-05-24 16:42:03 +02:00