Luis Aleixo
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1feec5a050
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Updated test_r0 test with new value from trapezoidal integration
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2021-11-08 10:36:46 +01:00 |
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Luis Aleixo
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5b639f433c
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Updated tests variables (transmissibility_factor, evaporation_factor and host_immunity)
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2021-11-08 10:36:46 +01:00 |
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Andre Henriques
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c5ac73518a
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Merge branch 'feature/replace_talking' into 'feature/scientific_model_update'
Replace 'Talking' by 'Speaking' throughout the code
See merge request cara/cara!270
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2021-10-27 11:02:39 +02:00 |
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Luis Aleixo
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39ccc3fc18
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Replace 'Talking' by 'Speaking' throughout the code
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2021-10-13 09:27:38 +02:00 |
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Andre Henriques
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a93a4a3e40
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Merge branch 'feature/t_factor_update' into 'feature/scientific_model_update'
Beta VOC and transmissibility factors update
See merge request cara/cara!265
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2021-10-12 18:20:39 +02:00 |
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Luis Aleixo
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8f601ef37c
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Bug on Betta VOC
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2021-10-12 16:49:18 +02:00 |
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Luis Aleixo
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73b36b81db
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Changed PANGO names to greek letters
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2021-10-12 09:55:44 +02:00 |
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Luis Aleixo
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fe404bb374
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Update VOCs references
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2021-10-07 15:19:55 +02:00 |
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Luis Aleixo
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7a4e64c9b6
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Added Beta VOC
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2021-10-07 12:11:18 +02:00 |
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Luis Aleixo
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1eb9d85b24
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Changed transmissibility_factor for each virus
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2021-10-07 12:11:18 +02:00 |
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Andre Henriques
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2f7877ce20
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Merge branch 'feature/scientific_model_update_ipympl_version' into 'feature/scientific_model_update'
ipympl (matplotlib jupyter extension) version update
See merge request cara/cara!271
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2021-10-07 09:21:03 +02:00 |
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Luis Aleixo
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13bc06640a
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Changed ipympl package version
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2021-10-07 09:15:15 +02:00 |
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Andre Henriques
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4e0e8f6392
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Merge branch 'feature/diameter_dependent_dynamics_and_deposition' into 'feature/scientific_model_update'
Model upgraded into fully diameter-dependent model
See merge request cara/cara!263
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2021-09-22 15:34:41 +02:00 |
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Nicolas Mounet
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de0b0b4b10
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Adding diameter dependence of deposition factor
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2021-09-22 15:15:21 +02:00 |
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Nicolas Mounet
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4c33766e59
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Adding diameter dependence of settling velocity from gravitation
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2021-09-22 11:51:39 +02:00 |
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Nicolas Mounet
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dde63fd623
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Adding exposed population host immunity to integration tests from test_monte_carlo_full_models.py
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2021-09-22 11:51:09 +02:00 |
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Nicolas Mounet
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c2f2ca1bf6
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Merge branch 'feature/BLO_data' into 'feature/scientific_model_update'
BLO particle concentration emission value update
See merge request cara/cara!253
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2021-09-22 09:06:50 +02:00 |
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Nicolas Mounet
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cbb17e4950
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Updating test_expiration_aerosols
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2021-09-22 08:55:39 +02:00 |
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Luis Aleixo
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66ebf8a2bb
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Correct Cn values for B and L factors
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2021-09-21 17:16:01 +02:00 |
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Nicolas Mounet
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c5a849f653
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Merge branch 'feature/probability_infection' into 'feature/scientific_model_update'
Changed probability of infection formula
See merge request cara/cara!262
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2021-09-21 12:05:02 +02:00 |
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Luis Aleixo
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364f20930e
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Changed P(I) formula and added host immunity for exposed Population
Fixed values for viable_to_RNA_ratio and transmissibility_factor of each Virus variant
Updated probability of infection formula
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2021-09-21 11:49:22 +02:00 |
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Luis Aleixo
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e00d7982a8
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Added a uniform distribution for the infectious dose
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2021-09-21 11:46:04 +02:00 |
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Andre Henriques
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414b133856
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Merge branch 'feature/infectious_dose_dist' into 'feature/scientific_model_update'
Infectious dose with uniform distribution
See merge request cara/cara!261
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2021-09-20 16:23:12 +02:00 |
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Luis Aleixo
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35ea838933
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Added a uniform distribution for the infectious dose
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2021-09-20 16:15:46 +02:00 |
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Nicolas Mounet
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38a8870535
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Merge branch 'feature/infectious_virus_fraction' into 'feature/scientific_model_update'
Updated inhaled dose with Infectious virus fraction
See merge request cara/cara!260
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2021-09-20 14:26:03 +02:00 |
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Luis Aleixo
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e2327ee82d
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Deactivate pipeline
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2021-09-20 14:20:51 +02:00 |
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Luis Aleixo
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0929bfc0b0
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Changed the f_inf calculation to the InfectedPopulation class
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2021-09-20 12:12:31 +02:00 |
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Luis Aleixo
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153896ec7e
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Updated host immunity declaration to model generator
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2021-09-20 12:12:31 +02:00 |
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Luis Aleixo
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61be4a57f5
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Updated infected probability with f_inf that considers the host immunity and the viable-to-RNA distribution
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2021-09-17 14:46:45 +02:00 |
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Andre Henriques
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86ab306dd9
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Merge branch 'feature/diameter_dependence' into 'feature/scientific_model_update'
Monte-Carlo sampling of the aerosol diameters with BLO model
See merge request cara/cara!259
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2021-09-17 12:11:18 +02:00 |
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Nicolas Mounet
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396339f7bb
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Modifying condition to trigger the averaging of the exposure in cara/models.py
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2021-09-17 09:34:00 +02:00 |
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Nicolas Mounet
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84fcddcd86
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Preventing MultipleExpiration to be used with distributions
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2021-09-17 09:34:00 +02:00 |
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Nicolas Mounet
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efe35da414
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Taking the mean of the exposure only when diameter is an array (represents a distribution)
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2021-09-16 18:15:25 +02:00 |
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Nicolas Mounet
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30eb90099b
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Introducing cn as parameter for the Expiration, and proper normalization of the exposure
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2021-09-16 18:15:25 +02:00 |
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Nicolas Mounet
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acdd22cb07
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Bugs fixed in monte_carlo/data.py; updating ExposureModel for diameter dependent exposure
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2021-09-16 18:15:25 +02:00 |
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Nicolas Mounet
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28a9e5d5b3
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Adding expiration diameter distributions from the BLO model
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2021-09-16 18:15:25 +02:00 |
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Nicolas Mounet
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7d3a83c629
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Removing completely the previous BLO implementation for Expiration; tests updated accordingly
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2021-09-16 18:09:35 +02:00 |
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Nicolas Mounet
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ab90b04349
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Introducing diameter as a vectorised parameter of Expiration. Providing equivalent diameters for each expiration type (gives the same emission rate as before)
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2021-09-16 17:48:49 +02:00 |
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Nicolas Mounet
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936c72f76c
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Adding optional total concentration parameter in Expiration
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2021-09-16 17:22:32 +02:00 |
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Nicolas Mounet
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ca6e70f2f9
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Removing completely the previous BLO implementation for Expiration; tests updated accordingly
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2021-09-16 16:33:31 +02:00 |
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Nicolas Mounet
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85f0f1708e
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Removing infectious dose in emission rate when using known_individual_emission_rate
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2021-09-16 16:33:31 +02:00 |
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Nicolas Mounet
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d1ec990255
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Remove suprespreading event from the expiration types; replace by an optional parameter to fix directly the emission rate; updates the corresponding tests
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2021-09-16 16:33:31 +02:00 |
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Nicolas Mounet
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46465c499d
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Vectorising the Mask exhale_efficiency method
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2021-09-16 16:33:30 +02:00 |
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Nicolas Mounet
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83e2185763
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Introducing diameter as a vectorised parameter of Expiration. Providing equivalent diameters for each expiration type (gives the same emission rate as before)
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2021-09-16 14:41:06 +02:00 |
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Andre Henriques
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686c709cc9
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Merge branch 'feature/remove_superspreading' into 'master'
Remove suprespreading event from the expiration types
See merge request cara/cara!256
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2021-09-16 13:55:05 +02:00 |
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Nicolas Mounet
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af3ded7935
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Remove suprespreading event from the expiration types
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2021-09-16 13:55:04 +02:00 |
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Andre Henriques
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092d566dbe
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Merge branch 'feature/delta_default' into 'master'
Changes default strain in calculator to Delta.
See merge request cara/cara!257
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2021-09-14 23:51:49 +02:00 |
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jdevine
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5d4dc4b91d
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reverted model_generator default virus type
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2021-09-14 16:22:49 +02:00 |
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Andre Henriques
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705485b1d5
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Merge branch 'feature/concentration_normalization' into 'master'
Normalization of the computation of the concentration
See merge request cara/cara!255
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2021-09-14 16:11:45 +02:00 |
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Nicolas Mounet
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92f9bce7e5
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Normalization of the computation of the concentration
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2021-09-14 16:11:44 +02:00 |
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