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Author SHA1 Message Date
Phil Elson
7ee8276fba Update some of the method return types based on the review. 2021-04-06 14:28:52 +02:00
Phil Elson
67df4495a5 Add the tests that went with the changes. 2021-04-01 18:18:34 +02:00
Phil Elson
eb2c4eff08 Handle virus vectorisation. 2021-03-28 08:18:35 +02:00
Phil Elson
e4e44bddd5 Implement vectorisation support for the ventilation schemes. 2021-03-28 07:35:42 +02:00
Phil Elson
9b836a6507 Handle arrays in the cache of the model by using the memoization library. Speeds up the single model case too. 2021-03-28 06:56:49 +02:00
Phil Elson
bb9b8657c6 Give some context of what cara.models represents. 2021-03-28 05:53:47 +02:00
Nicola Tarocco
2c12797962 Merge branch 'main/reduce_builds' into 'master' 
Simplify the build since we only need one application image for both the calculator and the expert app

See merge request cara/cara!152
 2021-03-26 10:28:22 +00:00
Nicola Tarocco
c87ec4f4cb Merge branch 'feature/user_domain_tracking' into 'master' 
Set a custom variable in piwik in order to track the authenticated user's origin/domain

Closes #146

See merge request cara/cara!153
 2021-03-26 10:28:09 +00:00
Phil Elson
71deccf6e0 Set a custom variable in piwik in order to track the authenticated user's origin/domain. 2021-03-26 10:22:58 +01:00
Phil Elson
989a7ddd6a Simplify the build since we only need one application image for both the caclulator and the expert app. 2021-03-26 08:50:51 +01:00
Philip James Elson
d5d583ad8b Merge branch 'fix/breaks_validation' into 'master' 
Removed infected break validation if breaks not separate

Closes #152

See merge request cara/cara!151
 2021-03-19 15:38:29 +00:00
Gabriella Azzopardi
5bd1c36d9b Removed infected break validation if breaks not separate 2021-03-19 15:38:27 +00:00
James Devine
a7eaad409f Merge branch 'feature/r-warning' into 'master' 
Added unacceptable red warning if expected new cases >1

Closes #151

See merge request cara/cara!149
 2021-03-17 16:11:27 +00:00
James Devine
00ac31ea47 Added unacceptable red warning if expected new cases >1 2021-03-17 16:11:27 +00:00
James Devine
4cfb0f80f8 Merge branch 'feature/control-rooms' into 'master' 
New activity profiles for control rooms

Closes #150

See merge request cara/cara!150
 2021-03-17 10:34:07 +00:00
James Devine
28b5d01ab3 New activity profiles for control rooms 2021-03-17 10:34:06 +00:00
Philip James Elson
4b7544acef Merge branch 'fix/calculator_UI' into 'master' 
Unrequire ventilation options not selected

See merge request cara/cara!148
 2021-03-12 13:57:00 +00:00
Gaby Azzopardi
09b7dbe4df Unrequire ventilation options not selected 2021-03-12 14:33:35 +01:00
Gabriella Azzopardi
754a7a28c4 Merge branch 'feature/userguide-as-html' into 'master' 
Remove the userguide from the README, and move it to a template. I've...

See merge request cara/cara!146
 2021-03-10 16:28:58 +00:00
Phil Elson
34378e3ca7 Remove the userguide from the README, and move it to a template. I've converted this using mistune (the tool that we use already in cara) to convert from markdown to html. 2021-03-10 15:52:45 +01:00
Nicolas Mounet
079a485545 Merge branch 'userguide-update-P.1' into 'master' 
Added note on P.1 transmission/Manaus antibody levels.

See merge request cara/cara!145
 2021-03-09 11:06:53 +00:00
James Devine
f77a828e6d Added note on P.1 transmission/Manaus antibody levels. 2021-03-09 11:06:53 +00:00
Philip James Elson
bf22611454 Merge branch 'develop/report_PI' into 'master' 
Update Pi display

See merge request cara/cara!144
 2021-03-09 10:55:53 +00:00
Gabriella Azzopardi
7ebdcaace5 Update Pi display 2021-03-09 10:55:52 +00:00
James Devine
12c3721996 Merge branch 'feature/virus_variant' into 'master' 
Feature: virus variant

Closes #133

See merge request cara/cara!130
 2021-03-09 08:38:48 +00:00
Nicolas Mounet
bf45490dfc Renaming variant into B117, and avoid calling it UK variant in forms and reports. Change its viral load back to std value, and increase infectivity to 1/30 2021-03-09 08:38:47 +00:00
Gabriella Azzopardi
e6937ea297 Merge branch 'fix/disclaimer' into 'master' 
Fix the disclaimer text which I broke in https://gitlab.cern.ch/cara/cara/-/merge_requests/141/

See merge request cara/cara!143
 2021-03-03 19:12:05 +00:00
Phil Elson
42e64c3064 Fix the disclaimer text which I broke in https://gitlab.cern.ch/cara/cara/-/merge_requests/141/ 2021-03-03 19:53:43 +01:00
Philip James Elson
a06e679393 Merge branch 'feature/openshift-templates-auth-service' into 'master' 
Add OpenShift templates for new auth service

See merge request cara/cara!142
 2021-03-03 18:45:36 +00:00
Nicola Tarocco
babde8b0bc Add OpenShift templates for new auth service 2021-03-03 19:37:18 +01:00
Andre Henriques
c4a288356a Merge branch 'feature/readme_disclaimer' into 'master' 
Add a disclaimer about the repository, and remove the inaccurate GPL statement

See merge request cara/cara!141
 2021-03-03 16:26:28 +00:00
Phil Elson
d4a33b546b Add a disclaimer about the repository, and remove the inaccurate GPL statement. 2021-03-03 16:55:42 +01:00
Nicola Tarocco
18af16f749 Merge branch 'feature/oidc-nginx' into 'master' 
Implement authentication through nginx's ngx_http_auth_request_module module

See merge request cara/cara!139
 2021-03-02 17:54:13 +00:00
Phil Elson
28f7b678d7 Address remaining review actions. 2021-03-02 18:43:01 +01:00
Gabriella Azzopardi
d42d82c312 Merge branch 'doc/intended_users' into 'master' 
Specified intended users of CARA

See merge request cara/cara!140
 2021-03-02 14:12:30 +00:00
Gaby Azzopardi
efb17a05cb Specified intended users of CARA 2021-03-02 15:09:53 +01:00
Phil Elson
8611cdef4d Improve the auth-service to encode the session information into a single secure cookie that cara can read. 2021-03-01 18:45:18 +01:00
Philip James Elson
040ed05008 Merge branch 'nico/test-cara-dev' into 'master' 
Fixes to OpenShift templates

See merge request cara/cara!138
 2021-03-01 15:27:39 +00:00
Philip James Elson
559f380010 Merge branch 'feature/report-QR' into 'master' 
Automatic report regeneration

See merge request cara/cara!124
 2021-03-01 15:19:17 +00:00
Gabriella Azzopardi
2997607e60 Automatic report regeneration 2021-03-01 15:19:15 +00:00
Nicola Tarocco
175fc49338 Fixed to OpenShift templates 2021-03-01 16:15:47 +01:00
Phil Elson
85a378691e Implement OIDC through nginx's ngx_http_auth_request_module module. 2021-02-26 22:08:05 +01:00
Philip James Elson
1ff9a4d352 Merge branch 'form_cleanup' into 'master' 
Form cleanup

- Cleaning up of form elements to have consistent and more clear names 
    - Taken out of merge !124, including bug fix to unrequire ventilation fields when switching between types (closes issue #139)
- Minor update to form UI which:
    1. Only clears invalid inputs when changing ventilation option (closes issue #125)
    2. Avoids red borders when showing ventilation text inputs (closes issue #45)
- Updated calculator version to 1.4.0

See merge request cara/cara!132
 2021-02-18 10:33:38 +00:00
Gabriella Azzopardi
3b620b0be0 Refine the form attributes & values in readiness for exposing a public perma-URL 2021-02-18 10:33:37 +00:00
Philip James Elson
182294348f Merge branch 'feature/openshift-templates' into 'master' 
Add OpenShift templates

See merge request cara/cara!135
 2021-02-10 10:39:15 +00:00
Philip James Elson
858e51262e Merge branch 'feature/split_break_times' into 'master' 
Split break times

Closes #118

See merge request cara/cara!129
 2021-02-10 10:17:49 +00:00
Gabriella Azzopardi
ad82e73c27 Revert "Automate infected breaks DIV creation in JS" 
This reverts commit c8fb1b68f65e41575ba698814e6d835cc3bf389f
 2021-02-10 10:17:48 +00:00
Andre Henriques
bada12692b Merge branch 'upadate_Acknowledgements' into 'master' 
upadate_thanks

See merge request cara/cara!137
 2021-02-04 09:07:37 +00:00
Andre Henriques
0dcea6a9d0 upadate_thanks 2021-02-04 09:05:58 +00:00
Gabriella Azzopardi
582f7e0e3b Merge branch 'update_authors' into 'master' 
update_authors_Nico

See merge request cara/cara!136
 2021-02-04 08:45:13 +00:00