Commit graph

1890 commits

Author SHA1 Message Date
Andre Henriques
b51e6c6d07 Merge branch 'feature/general_update' into 'master'
README and Zenodo updates

See merge request cara/caimira!414
2022-11-23 16:59:30 +01:00
Andre Henriques
20b65b6081 Merge branch 'feature/HI_data' into 'master'
Host Immunity Data

See merge request cara/caimira!401
2022-11-23 16:54:52 +01:00
Luis Aleixo
616217cea4 Merge branch 'readme-route-annotation' into 'master'
add doc related to OpenShift timeout setting

See merge request cara/caimira!415
2022-11-23 15:46:36 +01:00
Nicola Tarocco
bb1518d4a8
add doc related to OpenShift timeout setting 2022-11-23 10:24:54 +01:00
Luis Aleixo
d29ef65c74 Added zenodo json structure and updated readme 2022-11-22 11:43:04 +01:00
Luis Aleixo
b836f608cc Merge branch 'feature/signature_type' into 'master'
Added return type for functions that have variable annotations

See merge request cara/caimira!413
2022-11-21 17:11:20 +01:00
Luis Aleixo
e3215d0f5c added return type for function that has variable annotations 2022-11-18 11:55:09 +01:00
Luis Aleixo
2b19ea163f updated userguide for VE data and moved vaccination block under virus type 2022-11-14 08:57:16 +01:00
Luis Aleixo
db85c41fa0 added VE script and excel file 2022-11-10 16:09:33 +01:00
Luis Aleixo
a239b4f1ba Increased version number 2022-11-10 16:09:33 +01:00
Luis Aleixo
e82f6e58d2 test for host immunity vectorisation 2022-11-10 16:09:32 +01:00
Luis Aleixo
98b08a05e0 moved select options (primary and booster vaccines) to JS 2022-11-10 16:09:32 +01:00
Luis Aleixo
9e4d1c0937 updated VE and added default values on UI components 2022-11-10 16:09:32 +01:00
Luis Aleixo
01c2454e0d new vaccination data with VE < 0 as 0 and " or " entries counting on both vaccines 2022-11-10 16:09:32 +01:00
Luis Aleixo
34f32006f4 added primary and booster vaccine input tuple validation 2022-11-10 16:09:32 +01:00
Luis Aleixo
65afb91b61 handled display errors 2022-11-10 16:09:32 +01:00
Luis Aleixo
4ab95fcfaa added default values for vaccine types on tests 2022-11-10 16:09:32 +01:00
Luis Aleixo
4dee41a41e Added UI input field for vaccination (primary and booster) 2022-11-10 16:09:32 +01:00
Luis Aleixo
b2d6a308a5 added vaccine effectiveness data to __init__.py in data folder 2022-11-10 16:09:32 +01:00
Luis Aleixo
e87a5e2830 added backend changes for vaccination data 2022-11-10 16:09:32 +01:00
Luis Aleixo
75f0915ea8 Merge branch 'feature/pytest-mypy_error' into 'master'
restricted pytest-mypy version

See merge request cara/caimira!411
2022-11-10 16:07:45 +01:00
Luis Aleixo
098da530cb restricted pytest-mypy version 2022-11-10 16:02:43 +01:00
Andre Henriques
dedf5f2bf8 Merge branch 'feature/dilution_update' into 'master'
Dilution factor update

See merge request cara/caimira!408
2022-11-09 15:34:13 +01:00
Luis Aleixo
e35edeab44 updated exh_coef variable name 2022-11-09 11:13:27 +01:00
Luis Aleixo
4c354c5a4b Merge branch 'feature/scikit-learn' into 'master'
Removed duplicated requirement

See merge request cara/caimira!410
2022-11-09 09:14:22 +01:00
Luis Aleixo
aa6181641b removed duplicated requirement 2022-11-09 08:56:33 +01:00
CERN\Andrejh
a5b295a165 exh_coef additional explanation 2022-11-08 17:40:25 +01:00
Luis Aleixo
599603126f Updated methods docstrings 2022-11-08 17:40:25 +01:00
Luis Aleixo
997eb7eebb updated documentation 2022-11-08 17:40:25 +01:00
Luis Aleixo
230f1cedff Adapted dilution factor formula with exhalation coefficient 2022-11-08 17:40:25 +01:00
Luis Aleixo
093f44613a Merge branch 'feature/sklearn_update' into 'master'
sklearn update

See merge request cara/caimira!409
2022-11-08 17:39:51 +01:00
Luis Aleixo
bd771d7214 sklearn is deprecated causing the pipeline to fail 2022-11-08 17:32:59 +01:00
Andre Henriques
b958ff634d Merge branch 'feature/post_init_diameter_validation' into 'master'
Check for the diameter type

See merge request cara/caimira!382
2022-11-04 17:56:47 +01:00
Andre Henriques
d2efab32e9 Merge branch 'feature/disclaimer_fix' into 'master'
Documentation update

Closes #287

See merge request cara/caimira!407
2022-11-03 11:10:17 +01:00
Luis Aleixo
cf330ab9af updated t0 formula according to published paper 2022-11-03 09:15:05 +01:00
Luis Aleixo
eb87574634 Updated docs text 2022-11-02 16:53:19 +01:00
Luis Aleixo
4f091946ca Updated documentation 2022-11-02 15:41:20 +01:00
Luis Aleixo
a898e72bd5 Q0φ with instead of BR directly 2022-11-02 15:40:40 +01:00
Luis Aleixo
44f016bb16 updated message errors and added room volume vectorisation test when as a ventilation parameter 2022-11-02 14:57:43 +01:00
Luis Aleixo
a32c4f1ae3 update to documentation on dilution factor 2022-10-28 12:17:12 +02:00
Luis Aleixo
9ac0a4863c Fixed typo in documentation 2022-10-24 15:12:07 +02:00
Luis Aleixo
faf41bed4a removed error from disclaimer 2022-10-24 15:08:53 +02:00
Luis Aleixo
ecf99b34cc Updated tests and model post_init method 2022-10-20 14:19:49 +02:00
Luis Aleixo
24ef358571 adapted post_init method for diameter-independent elements of the IVRR 2022-10-19 17:55:18 +02:00
Luis Aleixo
5a6f4d54a1 Added tests for ExposureModel __post_init__ conditions 2022-10-18 15:35:35 +02:00
Luis Aleixo
3314d0146c Updated the ExposureModule conditions on post_init 2022-10-18 15:35:35 +02:00
Luis Aleixo
f7bce0ef24 added verification for diameter independent parameters 2022-10-18 15:35:35 +02:00
Andre Henriques
2433f024a5 Merge branch 'feature/template_theme' into 'master'
hide CERN theme from README

Closes #289

See merge request cara/caimira!406
2022-10-18 09:09:24 +02:00
Luis Aleixo
87049460ee 'mask' CERN theme from README 2022-10-18 08:58:14 +02:00
Andre Henriques
d331aaaf1b Merge branch 'feature/caimira_documentation_ref' into 'master'
Added documentation reference

Closes #280

See merge request cara/caimira!397
2022-10-14 15:53:16 +02:00