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Author SHA1 Message Date
Andre Henriques
ca7f84e4f7 Merge branch 'feature/infected_breaks' into 'master' 
Added logic for precise breaks for both infected and exposed

See merge request caimira/caimira!422
 2023-01-24 14:01:11 +01:00
Luis Aleixo
f14aa0a8a5 added logic for precise breaks for both infected and exposed 2023-01-23 11:11:08 +01:00
Luis Aleixo
6d9b0d1af9 Merge branch 'feature/numpy_dtype' into 'master' 
Numpy update with dtype

See merge request caimira/caimira!421
 2023-01-10 09:51:19 +01:00
Luis Aleixo
b04ebcfaf6 fixed numpy update error 2023-01-10 09:45:08 +01:00
Andre Henriques
1290f57deb Merge branch 'feature/bug_report_form' into 'master' 
Check for nan values on probabilistic exposure

Closes #295

See merge request caimira/caimira!420
 2022-12-15 17:32:40 +01:00
Luis Aleixo
87318a72c8 check for nan values on probabilistic exposure 2022-12-15 16:12:30 +00:00
Andre Henriques
cda6441a7b Merge branch 'feature/gitlab_group_rename' into 'master' 
updated GitLab repository URL

See merge request caimira/caimira!419
 2022-12-15 15:45:14 +01:00
Luis Aleixo
37d699d483 updated GitLab repository URL 2022-12-15 14:30:11 +00:00
Andre Henriques
d3a7fa5f2f Merge branch 'feature/global_incident_rates' into 'master' 
Global incident rates

Closes #279

See merge request cara/caimira!405
 2022-12-12 10:28:11 +01:00
Andre Henriques
295d975bf3 Merge branch 'feature/ARIA_new_inputs' into 'master' 
New precise activity and break inputs

See merge request cara/caimira!404
 2022-12-07 16:44:07 +01:00
Luis Aleixo
d2ea27ce79 removed ARIA references 2022-12-06 10:03:24 +01:00
Luis Aleixo
21953de4a2 added reference for external dependencies (react) in calculator.form.html.j2 file 2022-12-06 09:59:57 +01:00
Luis Aleixo
388465ba9b added tests for simulation time start and end with breaks 2022-12-06 09:59:57 +01:00
Luis Aleixo
0b37aeca7d added tests for aria breaks and precise activities 2022-12-06 09:59:57 +01:00
Luis Aleixo
180bf4dae5 completed validation on ARIA inputs model_generator 2022-12-06 09:59:57 +01:00
Luis Aleixo
5cce495692 changed precise activity type object structure 2022-12-06 09:59:57 +01:00
Luis Aleixo
06eaaf7dd1 added additional typing return types 2022-12-06 09:59:57 +01:00
Luis Aleixo
8cccb0eba9 added method and validation to generate precise activities from ARIA 2022-12-06 09:59:57 +01:00
Luis Aleixo
f8eb35f18b added a method to generate break times based on ARIA inputs 2022-12-06 09:59:57 +01:00
Andre Henriques
d5c038cbbf Merge branch 'feature/typo' into 'master' 
Typo in strings

Closes #292

See merge request cara/caimira!417
 2022-12-05 17:27:46 +01:00
Luis Aleixo
a4b2801f0b additional typo 2022-12-05 17:08:09 +01:00
Luis Aleixo
09c22cda6e typo issue 292 2022-12-05 17:04:52 +01:00
Luis Aleixo
1cbc1d1113 handle WHO message when input changes by user 2022-11-29 16:50:54 +01:00
Luis Aleixo
2d909bc905 Added a 0-value verification for geographical cases 2022-11-25 16:19:46 +01:00
Luis Aleixo
5915a0d520 used 7-day rolling average 2022-11-25 16:19:45 +01:00
Luis Aleixo
1a93439984 added incidence rate from API to UI 2022-11-25 16:19:45 +01:00
Luis Aleixo
917567c5df added server side API for global incident rates 2022-11-25 16:18:48 +01:00
Luis Aleixo
f0ed871693 Merge branch 'feature/mypy' into 'master' 
Added missing ignore

See merge request cara/caimira!416
 2022-11-24 09:15:03 +01:00
Luis Aleixo
c7f7ae85d4 tabulate 2022-11-23 17:26:42 +01:00
Andre Henriques
b51e6c6d07 Merge branch 'feature/general_update' into 'master' 
README and Zenodo updates

See merge request cara/caimira!414
 2022-11-23 16:59:30 +01:00
Andre Henriques
20b65b6081 Merge branch 'feature/HI_data' into 'master' 
Host Immunity Data

See merge request cara/caimira!401
 2022-11-23 16:54:52 +01:00
Luis Aleixo
616217cea4 Merge branch 'readme-route-annotation' into 'master' 
add doc related to OpenShift timeout setting

See merge request cara/caimira!415
 2022-11-23 15:46:36 +01:00
Nicola Tarocco
bb1518d4a8
add doc related to OpenShift timeout setting 2022-11-23 10:24:54 +01:00
Luis Aleixo
d29ef65c74 Added zenodo json structure and updated readme 2022-11-22 11:43:04 +01:00
Luis Aleixo
b836f608cc Merge branch 'feature/signature_type' into 'master' 
Added return type for functions that have variable annotations

See merge request cara/caimira!413
 2022-11-21 17:11:20 +01:00
Luis Aleixo
e3215d0f5c added return type for function that has variable annotations 2022-11-18 11:55:09 +01:00
Luis Aleixo
2b19ea163f updated userguide for VE data and moved vaccination block under virus type 2022-11-14 08:57:16 +01:00
Luis Aleixo
db85c41fa0 added VE script and excel file 2022-11-10 16:09:33 +01:00
Luis Aleixo
a239b4f1ba Increased version number 2022-11-10 16:09:33 +01:00
Luis Aleixo
e82f6e58d2 test for host immunity vectorisation 2022-11-10 16:09:32 +01:00
Luis Aleixo
98b08a05e0 moved select options (primary and booster vaccines) to JS 2022-11-10 16:09:32 +01:00
Luis Aleixo
9e4d1c0937 updated VE and added default values on UI components 2022-11-10 16:09:32 +01:00
Luis Aleixo
01c2454e0d new vaccination data with VE < 0 as 0 and " or " entries counting on both vaccines 2022-11-10 16:09:32 +01:00
Luis Aleixo
34f32006f4 added primary and booster vaccine input tuple validation 2022-11-10 16:09:32 +01:00
Luis Aleixo
65afb91b61 handled display errors 2022-11-10 16:09:32 +01:00
Luis Aleixo
4ab95fcfaa added default values for vaccine types on tests 2022-11-10 16:09:32 +01:00
Luis Aleixo
4dee41a41e Added UI input field for vaccination (primary and booster) 2022-11-10 16:09:32 +01:00
Luis Aleixo
b2d6a308a5 added vaccine effectiveness data to __init__.py in data folder 2022-11-10 16:09:32 +01:00
Luis Aleixo
e87a5e2830 added backend changes for vaccination data 2022-11-10 16:09:32 +01:00
Luis Aleixo
75f0915ea8 Merge branch 'feature/pytest-mypy_error' into 'master' 
restricted pytest-mypy version

See merge request cara/caimira!411
 2022-11-10 16:07:45 +01:00