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Author SHA1 Message Date
Luis Aleixo
e7decf52b2 update report_generator according to previous version 2021-08-05 15:11:28 +02:00
Luis Aleixo
81dcbcd39e file used to plot and write data 2021-08-05 15:10:21 +02:00
Luis Aleixo
2988f2085b files division 2021-08-05 14:40:08 +02:00
Luis Aleixo
90040a62a2 plot with log scale on y axis 2021-08-05 13:40:57 +02:00
Luis Aleixo
ae085826dd plot fig 2021-08-05 09:58:22 +02:00
Luis Aleixo
d03ff7f4f0 added model_scenario 2021-08-05 09:41:01 +02:00
Luis Aleixo
b59ae0236d tab missing 2021-08-04 14:16:48 +02:00
Luis Aleixo
f614027b02 test_exposure_model values adjustments 2021-08-04 14:07:01 +02:00
Luis Aleixo
5ddddf10f8 Changed 'infectious virus' to 'virions' 2021-08-04 13:36:52 +02:00
Luis Aleixo
415ade0185 single test for infectious_dose_vectorisation fix #184 2021-08-04 11:43:58 +02:00
Luis Aleixo
160dcf6a60 test_infectious_dose_vectorisation code implementation 2021-08-04 09:59:04 +02:00
Luis Aleixo
c1938889b8 test_infected_population_vectorisation and test_concentration_model_vectorisation tests fix 2021-08-03 16:11:59 +02:00
Luis Aleixo
9a43db9c5a other variable names 2021-08-03 15:33:40 +02:00
Luis Aleixo
4b63281f02 test update with new values 2021-08-03 15:27:28 +02:00
Luis Aleixo
f6340d7986 added logic behing ER and concentration (model) 2021-08-03 13:45:14 +02:00
Luis Aleixo
0935056df2 variable renaming (remove quantum) 2021-08-03 11:22:08 +02:00
Luis Aleixo
52c4eb7c2c Revert "variables renaming (removal of quantum)" 
This reverts commit ae4db5a4b0.
 2021-08-03 11:18:44 +02:00
Luis Aleixo
ae4db5a4b0 variables renaming (removal of quantum) 2021-08-03 11:10:57 +02:00
Philip James Elson
2645ff2a43 Merge branch 'feature/check-oc-config-prod' into 'master' 
Align the dev and prod openshift configs, and validate that they remain correct

See merge request cara/cara!230
 2021-07-31 04:04:23 +00:00
Philip James Elson
ec724a5a3f Merge branch 'fix/move-expert-app-into-package' into 'master' 
Fix the expert app, as the new docker image did not support running as non-root

See merge request cara/cara!235
 2021-07-30 15:57:43 +00:00
Phil Elson
af3fe421db Fix the expert app, as the new docker image did not support running as non-root. 2021-07-30 17:53:19 +02:00
Philip James Elson
7855e45676 Merge branch 'fix/move-expert-app-into-package' into 'master' 
Update the public container image to use Python 3.9

See merge request cara/cara!232
 2021-07-30 08:53:32 +00:00
Phil Elson
3ef00c8312 Update the public container image to use Python 3.9 also. 2021-07-30 10:51:30 +02:00
Philip James Elson
67d0281c98 Merge branch 'fix/move-expert-app-into-package' into 'master' 
Move the expert app into the cara package

See merge request cara/cara!231
 2021-07-30 08:48:13 +00:00
Phil Elson
e1392fb8ce Move the expert app into the cara package. Helps with convenient access from the cara-webservice image. 2021-07-30 10:45:24 +02:00
Philip James Elson
ca2bbd8340 Merge branch 'feature/py39-cara-webservice' into 'master' 
Create a Python3.9 based Dockerfile for cara to run on openshift

See merge request cara/cara!229
 2021-07-30 08:17:40 +00:00
Phil Elson
5350845852 Align the dev and prod openshift configs, and validate that they remain correct. 2021-07-30 09:47:32 +02:00
Nicola Tarocco
f7ce8c96f3 Continue to allow a relative path to be specified for the theme directory. 2021-07-30 08:55:19 +02:00
Phil Elson
3103663978 Create a Python3.9 based Dockerfile for cara to run on openshift. 2021-07-30 08:53:06 +02:00
Philip James Elson
234ca99d28 Merge branch 'feature/ci-checking-openshift-config' into 'master' 
Add CI to validate the test-cara openshift configuration

See merge request cara/cara!223
 2021-07-30 06:51:43 +00:00
Phil Elson
a2fd0e7fe5 Update to reflect the resource limit changes in cara-webservice. 2021-07-29 14:49:52 +02:00
Phil Elson
aeeb68cc09 Enable the config checker. 2021-07-29 10:04:53 +02:00
Phil Elson
74ee8b5241 Implement the normalisation and comparison of openshift config items 2021-07-29 09:38:59 +02:00
Phil Elson
b74ffebeb2 Tool to generate the config from the templates. 2021-07-29 09:38:59 +02:00
Phil Elson
91ea826060 Add a CI job to validate the test-cara instance. 2021-07-29 09:38:59 +02:00
Nicolas Mounet
43fd580ac2 Merge branch 'feature/py39' into 'master' 
Add support, and CI for Python 3.9

See merge request cara/cara!228
 2021-07-28 12:31:51 +00:00
Phil Elson
7109c821e8 Add support, and CI for Python 3.9 2021-07-28 11:17:45 +02:00
Nicola Tarocco
145509ba68 Merge branch 'feature/docker-builds' into 'master' 
Build the auth-service through a Dockerfile (and move to py39)

See merge request cara/cara!226
 2021-07-21 15:27:39 +00:00
Phil Elson
2fcadc7952 Add auth-service building to the CI. 2021-07-20 11:14:08 +02:00
Phil Elson
d7199f7a15 Build the auth-service through a Dockerfile to allow us to use the latest versions of libraries (e.g. python 3.9) 2021-07-20 11:06:07 +02:00
Andre Henriques
74586f70b1 Merge branch 'feature/scale-warning' into 'master' 
CERN Covid scale update - yellow level 2

See merge request cara/cara!225
 2021-07-19 14:55:09 +00:00
Luis Aleixo
918149e4c7 CERN Covid scale update - yellow level 2 2021-07-19 16:43:28 +02:00
Andre Henriques
3fbb953246 Merge branch 'feature/percentage_precision' into 'master' 
Change % format for P(i)

See merge request cara/cara!222
 2021-07-18 21:41:56 +00:00
Nicola Tarocco
99396fd7b1 Merge branch 'feature/parallelism_strikes_back' into 'master' 
Re-introduce parallelism through loky

See merge request cara/cara!224
 2021-07-16 13:29:42 +00:00
Phil Elson
77e9215812 Re-introduce parallelism through loky. 2021-07-16 13:56:28 +02:00
Philip James Elson
b21a387053 Merge branch 'feat/run-from-docker' into 'master' 
Update the openshift templates to better reflect the deployed state of test-cara

See merge request cara/cara!221
 2021-07-16 08:57:05 +00:00
jdevine
967127384f Changed % responses for P(i), now given as 0.1f (1 decimal place, unless <1 then 2dp as previously) 
Modified alternative scenarios:
- The base case is no longer added to alternate scenarios
- HEPA/FFP2 options revised to make more sense
If using FFP2, no alternatives are added.
If using HEPA and FFP2, HEPA + Type 1 is included as an alternate
If using HEPA and Type I, HEPA + FFP2 is included as an alternate
 2021-07-14 18:20:25 +02:00
Phil Elson
7d14bc488f Tests passing for OpenShift config checking on the test-cara instance. 2021-07-14 13:32:02 +02:00
Andre Henriques
29a39040a5 Merge branch 'feature/scale-warning' into 'master' 
Feature/scale warning

Closes #171 and #173

See merge request cara/cara!213
 2021-07-13 13:02:02 +00:00
Gabriella Azzopardi
a966a03dd1 Merge branch 'maint/major_cara_version_update' into 'master' 
Increment the major version of the CARA model and the calculator.

See merge request cara/cara!220
 2021-07-13 11:14:41 +00:00