Commit graph

146 commits

Author SHA1 Message Date
Luis Aleixo
f8eb35f18b added a method to generate break times based on ARIA inputs 2022-12-06 09:59:57 +01:00
Luis Aleixo
a4b2801f0b additional typo 2022-12-05 17:08:09 +01:00
Luis Aleixo
09c22cda6e typo issue 292 2022-12-05 17:04:52 +01:00
Luis Aleixo
1cbc1d1113 handle WHO message when input changes by user 2022-11-29 16:50:54 +01:00
Luis Aleixo
2d909bc905 Added a 0-value verification for geographical cases 2022-11-25 16:19:46 +01:00
Luis Aleixo
5915a0d520 used 7-day rolling average 2022-11-25 16:19:45 +01:00
Luis Aleixo
1a93439984 added incidence rate from API to UI 2022-11-25 16:19:45 +01:00
Luis Aleixo
917567c5df added server side API for global incident rates 2022-11-25 16:18:48 +01:00
Andre Henriques
20b65b6081 Merge branch 'feature/HI_data' into 'master'
Host Immunity Data

See merge request cara/caimira!401
2022-11-23 16:54:52 +01:00
Luis Aleixo
e3215d0f5c added return type for function that has variable annotations 2022-11-18 11:55:09 +01:00
Luis Aleixo
2b19ea163f updated userguide for VE data and moved vaccination block under virus type 2022-11-14 08:57:16 +01:00
Luis Aleixo
db85c41fa0 added VE script and excel file 2022-11-10 16:09:33 +01:00
Luis Aleixo
a239b4f1ba Increased version number 2022-11-10 16:09:33 +01:00
Luis Aleixo
e82f6e58d2 test for host immunity vectorisation 2022-11-10 16:09:32 +01:00
Luis Aleixo
98b08a05e0 moved select options (primary and booster vaccines) to JS 2022-11-10 16:09:32 +01:00
Luis Aleixo
9e4d1c0937 updated VE and added default values on UI components 2022-11-10 16:09:32 +01:00
Luis Aleixo
01c2454e0d new vaccination data with VE < 0 as 0 and " or " entries counting on both vaccines 2022-11-10 16:09:32 +01:00
Luis Aleixo
34f32006f4 added primary and booster vaccine input tuple validation 2022-11-10 16:09:32 +01:00
Luis Aleixo
65afb91b61 handled display errors 2022-11-10 16:09:32 +01:00
Luis Aleixo
4ab95fcfaa added default values for vaccine types on tests 2022-11-10 16:09:32 +01:00
Luis Aleixo
4dee41a41e Added UI input field for vaccination (primary and booster) 2022-11-10 16:09:32 +01:00
Luis Aleixo
b2d6a308a5 added vaccine effectiveness data to __init__.py in data folder 2022-11-10 16:09:32 +01:00
Luis Aleixo
e87a5e2830 added backend changes for vaccination data 2022-11-10 16:09:32 +01:00
Luis Aleixo
e35edeab44 updated exh_coef variable name 2022-11-09 11:13:27 +01:00
CERN\Andrejh
a5b295a165 exh_coef additional explanation 2022-11-08 17:40:25 +01:00
Luis Aleixo
599603126f Updated methods docstrings 2022-11-08 17:40:25 +01:00
Luis Aleixo
997eb7eebb updated documentation 2022-11-08 17:40:25 +01:00
Luis Aleixo
230f1cedff Adapted dilution factor formula with exhalation coefficient 2022-11-08 17:40:25 +01:00
Andre Henriques
b958ff634d Merge branch 'feature/post_init_diameter_validation' into 'master'
Check for the diameter type

See merge request cara/caimira!382
2022-11-04 17:56:47 +01:00
Luis Aleixo
cf330ab9af updated t0 formula according to published paper 2022-11-03 09:15:05 +01:00
Luis Aleixo
eb87574634 Updated docs text 2022-11-02 16:53:19 +01:00
Luis Aleixo
4f091946ca Updated documentation 2022-11-02 15:41:20 +01:00
Luis Aleixo
a898e72bd5 Q0φ with instead of BR directly 2022-11-02 15:40:40 +01:00
Luis Aleixo
44f016bb16 updated message errors and added room volume vectorisation test when as a ventilation parameter 2022-11-02 14:57:43 +01:00
Luis Aleixo
a32c4f1ae3 update to documentation on dilution factor 2022-10-28 12:17:12 +02:00
Luis Aleixo
9ac0a4863c Fixed typo in documentation 2022-10-24 15:12:07 +02:00
Luis Aleixo
faf41bed4a removed error from disclaimer 2022-10-24 15:08:53 +02:00
Luis Aleixo
ecf99b34cc Updated tests and model post_init method 2022-10-20 14:19:49 +02:00
Luis Aleixo
24ef358571 adapted post_init method for diameter-independent elements of the IVRR 2022-10-19 17:55:18 +02:00
Luis Aleixo
5a6f4d54a1 Added tests for ExposureModel __post_init__ conditions 2022-10-18 15:35:35 +02:00
Luis Aleixo
3314d0146c Updated the ExposureModule conditions on post_init 2022-10-18 15:35:35 +02:00
Luis Aleixo
f7bce0ef24 added verification for diameter independent parameters 2022-10-18 15:35:35 +02:00
Luis Aleixo
f907a6d897 modified UI text 2022-10-14 15:48:41 +02:00
Luis Aleixo
d63a6f2cf1 updated headers submenu and and mobile responsiveness 2022-10-14 11:01:14 +02:00
Luis Aleixo
e13c96faa2 added icons and sections for documentation, apps, git and about 2022-10-14 11:01:13 +02:00
Luis Aleixo
6ed1282b27 Fixed typo in documentation 2022-10-11 12:07:23 +02:00
Luis Aleixo
beea8a800b updated inhalation and exhalation values 2022-10-11 10:39:21 +02:00
Luis Aleixo
b1b0c07098 Added new icon for cloth mask 2022-10-10 14:13:31 +02:00
Luis Aleixo
fa3190f6fb added test for cloth mask and missing reference 2022-10-10 14:13:31 +02:00
Luis Aleixo
3ea0d83e21 Added cloth mask to backend 2022-10-10 14:13:31 +02:00
Luis Aleixo
12b7b57593 moved default infectiousness_days value to SARSCoV2 class and added another test scenario 2022-10-10 11:15:05 +02:00
Luis Aleixo
d50d63d710 UI adjustments 2022-10-07 10:35:44 +02:00
Luis Aleixo
a91ef8f953 updated short range message for P(I) one infected 2022-10-07 09:25:04 +02:00
Luis Aleixo
52615b1cfb updated based on test excel results 2022-10-07 09:03:24 +02:00
Luis Aleixo
f7b63decc3 Modified total probability rule formula 2022-10-05 17:36:07 +02:00
Luis Aleixo
7a9401a6fa added number of incubation days as property of the virus and adapted tests 2022-10-05 15:10:50 +02:00
Luis Aleixo
9032a8815d changed variable name in report_generator and added a retry decorator in test 2022-10-04 17:31:17 +02:00
Luis Aleixo
a61b88ce1b Changed variable names 2022-10-04 11:47:25 +02:00
Luis Aleixo
c9134679fd added default number of infected population and made few UI changes 2022-10-04 11:14:34 +02:00
Luis Aleixo
10d743c149 UI changes for probabilistic approach 2022-10-03 14:42:45 +01:00
Luis Aleixo
1b3ef45b00 changes to user guide 2022-10-03 14:42:44 +01:00
Luis Aleixo
9f1155540c added new activity type conference/training 2022-10-03 14:42:44 +01:00
Luis Aleixo
6b8f438a48 added Cases() for each test scenario and added tests for the test_exposure_model 2022-10-03 14:42:44 +01:00
Luis Aleixo
8936b0db48 added UI input fields and updated report for the new P(I) 2022-10-03 14:42:44 +01:00
Luis Aleixo
5b578c15ef backend model changes 2022-10-03 14:42:44 +01:00
Luis Aleixo
7dd45aa2bb re-defined the environment variables to be none instead of <undefined> 2022-09-28 16:18:24 +02:00
Luis Aleixo
3ff35f849b added DOM element for ARVE API authentication error 2022-09-28 16:18:24 +02:00
Luis Aleixo
93f09508ac handled 401 errors when credentials are not provided 2022-09-28 16:18:24 +02:00
Luis Aleixo
ba956bc045 Added verification when sensors are offline 2022-09-28 16:18:23 +02:00
Luis Aleixo
b487f5272f Added verification when the ARVE credentials are or not defined 2022-09-28 16:18:23 +02:00
Luis Aleixo
810c3384e4 handled mypy newer release errors 2022-09-28 11:36:38 +02:00
Luis Aleixo
91c5585149 Updated Zenodo DOI 2022-09-23 10:54:02 +02:00
Luis Aleixo
6a5524a8b8 added validation tests and removed span error message 2022-09-21 11:53:19 +02:00
Luis Aleixo
c98261503e added server side validation 2022-09-21 11:42:39 +02:00
Luis Aleixo
01e3bf8ca5 Added UI validation for the total number of infected people 2022-09-21 11:42:39 +02:00
Luis Aleixo
862f65e5a0 hide window parameters 2022-09-19 10:00:26 +02:00
Luis Aleixo
8da4e7fc25 Changed alert message for authentication errors 2022-09-19 09:05:38 +02:00
Luis Aleixo
3081031d12 Updated readme on the API references 2022-09-19 09:05:38 +02:00
Luis Aleixo
d90e03446b Completely removed ARVE sensors on base theme 2022-09-19 09:05:37 +02:00
Luis Aleixo
7af00de5d4 added inside_temp and humidity as floats with "_NO_DEFAULT" default value 2022-09-19 09:05:37 +02:00
Luis Aleixo
81f399e2d7 added verification for inside_temperature data from sensors 2022-09-19 09:05:37 +02:00
Luis Aleixo
67a47dfd74 Added Math.round to input values 2022-09-19 09:05:37 +02:00
Luis Aleixo
b455fdee14 Handled typo on baseline model 2022-09-19 09:05:37 +02:00
Luis Aleixo
f793300b14 Added UI for sensors selection and handled UI navigations 2022-09-19 09:05:36 +02:00
Luis Aleixo
2bbf460664 Added API implementation on server side 2022-09-19 09:05:36 +02:00
Luis Aleixo
127efea738 updated version 2022-09-15 16:59:27 +02:00
Luis Aleixo
84b7377dff Maintained group name (cara) 2022-09-15 16:41:10 +02:00
Luis Aleixo
6c541952ee updated GitLab project URL 2022-09-15 11:12:34 +02:00
Andre Henriques
3b5c48344b Merge branch 'feature/caimira_UI' into 'master'
CARA to CAiMIRA full migration

Closes #277

See merge request cara/cara!391
2022-09-15 10:43:57 +02:00
Andre Henriques
7eb0d946bb Merge branch 'feature/CAIMIRA_infrastructure' into 'feature/caimira_UI'
CAiMIRA infrastructure update

See merge request cara/cara!392
2022-09-15 10:38:10 +02:00
Luis Aleixo
17c43efb41 last files rename 2022-09-15 10:01:11 +02:00
Luis Aleixo
a8b8c9c8f8 updated documentation 2022-09-12 16:11:01 +02:00
Luis Aleixo
4ba3a2dfcd Merge branch 'feature/caimira_UI' into feature/CAIMIRA_infrastructure 2022-09-12 12:00:05 +02:00
Luis Aleixo
a98b164a4f added missing files 2022-09-12 11:52:49 +02:00
Luis Aleixo
94312d6569 updated image class names 2022-09-09 16:57:20 +02:00
Luis Aleixo
f4ba8465ab updated folder's names and respective references 2022-09-09 16:57:20 +02:00